RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 PHACTR4Q8IZ21 702 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 PI4KAP1Q8N8J0 262 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 PLBD2Q8NHP8 589 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 DNAJB8Q8NHS0 232 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 CYB5D2Q8WUJ1 264 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 TMEM40Q8WWA1 233 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 GPR101Q96P66 508 aaPredicted RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 METTL22Q9BUU2 404 aaPredicted RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 UTP14AQ9BVJ6 771 aaKnown RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 CNNM2Q9H8M5 875 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 NMRK2Q9NPI5 230 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 DBF4Q9UBU7 674 aaPredicted RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 TRMT112Q9UI30 125 aaKnown RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 TPX2Q9ULW0 747 aaKnown RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 CEP131Q9UPN4 1083 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 MAP3K2Q9Y2U5 619 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 ARFGEF1Q9Y6D6 1849 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 ADCY9O60503 1353 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 LAMB2P55268 1798 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 NPHP1O15259 732 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 CYP26A1O43174 497 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 MED26O95402 600 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 IMPDH2P12268 514 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 NME1P15531 152 aaKnown RBP5.42□□□□□ -1.54
SPG11-211ENST00000558561 RAG1P15918 1043 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 DNAJA1P31689 397 aaKnown RBP5.42□□□□□ -1.54
SPG11-211ENST00000558561 PDE6BP35913 854 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 EIF6P56537 245 aaKnown RBP5.42□□□□□ -1.54
SPG11-211ENST00000558561 ARID5AQ03989 594 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 EPHA10Q5JZY3 1008 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 NLRC3Q7RTR2 1065 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 TRMT2AQ8IZ69 625 aaKnown RBP5.42□□□□□ -1.54
SPG11-211ENST00000558561 SLC43A3Q8NBI5 491 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 CPLX3Q8WVH0 158 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 CELF1Q92879 486 aaKnown RBP5.42□□□□□ -1.54
SPG11-211ENST00000558561 MASTLQ96GX5 879 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 CCDC74BQ96LY2 380 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 CRBNQ96SW2 442 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 SLC9A7Q96T83 725 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 SRRTQ9BXP5 876 aaKnown RBP5.42□□□□□ -1.54
SPG11-211ENST00000558561 HYPKQ9NX55 129 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 RNF181Q9P0P0 153 aa5.42□□□□□ -1.54
SPG11-211ENST00000558561 ATP10DQ9P241 1426 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 FER1L6Q2WGJ9 1857 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 COL4A5P29400 1685 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 FAM86C2PA6NEL3 165 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 MEIS3P2A8K0S8 358 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 PRR33A8MZF0 331 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 CCER2I3L3R5 266 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 SNAP23O00161 211 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 RGS13O14921 159 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 DDNO94850 711 aaPredicted RBP5.41□□□□□ -1.54
SPG11-211ENST00000558561 UBOX5O94941 541 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 ACRP10323 421 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 FOSL1P15407 271 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 NPR1P16066 1061 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 GBP1P32455 592 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 GIPRP48546 466 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 ST5P78524 1137 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 CRY2Q49AN0 593 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 CCDC30Q5VVM6 783 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 STYK1Q6J9G0 422 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 KSR2Q6VAB6 950 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 LSRQ86X29 649 aaPredicted RBP5.41□□□□□ -1.54
SPG11-211ENST00000558561 RBBP8NLQ8NC74 664 aaPredicted RBP5.41□□□□□ -1.54
SPG11-211ENST00000558561 SSH1Q8WYL5 1049 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 ANAPC16Q96DE5 110 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 SHDQ96IW2 340 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.41□□□□□ -1.54
SPG11-211ENST00000558561 PRDM5Q9NQX1 630 aaPredicted RBP5.41□□□□□ -1.54
SPG11-211ENST00000558561 ZNF277Q9NRM2 450 aaPredicted RBP5.41□□□□□ -1.54
SPG11-211ENST00000558561 ZC3H7BQ9UGR2 993 aaKnown RBP5.41□□□□□ -1.54
SPG11-211ENST00000558561 RNF112Q9ULX5 631 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 ZNF652Q9Y2D9 606 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 MRVI1Q9Y6F6 885 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 DLEC1Q9Y238 1755 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 IL16Q14005 1332 aa5.41□□□□□ -1.54
SPG11-211ENST00000558561 DDX60Q8IY21 1712 aaKnown RBP5.4□□□□□ -1.54
SPG11-211ENST00000558561 ARFGEF2Q9Y6D5 1785 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 SHTN1A0MZ66 631 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 IRS4O14654 1257 aaPredicted RBP5.4□□□□□ -1.54
SPG11-211ENST00000558561 CBX7O95931 251 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 HOXB7P09629 217 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 SSTR4P31391 388 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 CASP7P55210 303 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 OXCT1P55809 520 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 HTRA3P83110 453 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 DLK2Q6UY11 383 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 PPP1R42Q7Z4L9 355 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 MCF2L2Q86YR7 1114 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 FAM169BQ8N8A8 192 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 KAZALD1Q96I82 304 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 GMLQ99445 158 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 GTF2IRD1Q9UHL9 959 aa5.4□□□□□ -1.54
SPG11-211ENST00000558561 ABCC4O15439 1325 aa5.4□□□□□ -1.55
SPG11-211ENST00000558561 ANKRD36CQ5JPF3 1778 aa5.39□□□□□ -1.55
SPG11-211ENST00000558561 IGF2BP3O00425 579 aaKnown RBP eCLIP5.39□□□□□ -1.55
SPG11-211ENST00000558561 TNFRSF10CO14798 259 aa5.39□□□□□ -1.55
SPG11-211ENST00000558561 COBLO75128 1261 aa5.39□□□□□ -1.55
SPG11-211ENST00000558561 LRRN2O75325 713 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms