RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PNMA8AQ86V59 439 aaPredicted RBP4.07□□□□□ -1.76
TRAV28-201ENST00000557548 SAMD3Q8N6K7 520 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 ZNF655Q8N720 491 aaPredicted RBP4.07□□□□□ -1.76
TRAV28-201ENST00000557548 C2orf69Q8N8R5 385 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 DAGLBQ8NCG7 672 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 C1orf162Q8NEQ5 155 aaPredicted RBP4.07□□□□□ -1.76
TRAV28-201ENST00000557548 SLC5A5Q92911 643 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 FBXW5Q969U6 566 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 SLC13A1Q9BZW2 595 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 OXSMQ9NWU1 459 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 ZBTB21Q9ULJ3 1066 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 CBLCQ9ULV8 474 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 NPHP3-ACAD11A0A0J9YXS1 232 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 FAM47E-STBD1D6RA91 191 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 TGM5O43548 720 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 ZNF205O95201 554 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 SYPP08247 313 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 PAMP19021 973 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 NOS3P29474 1203 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 RECQLP46063 649 aaPredicted RBP4.06□□□□□ -1.76
TRAV28-201ENST00000557548 IREB2P48200 963 aaKnown RBP4.06□□□□□ -1.76
TRAV28-201ENST00000557548 FAPQ12884 760 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 SAFB2Q14151 953 aaKnown RBP eCLIP4.06□□□□□ -1.76
TRAV28-201ENST00000557548 MINDY4Q4G0A6 757 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 RTP2Q5QGT7 225 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 BROXQ5VW32 411 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 IQCEQ6IPM2 695 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 PGM2L1Q6PCE3 622 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 FAM214BQ7L5A3 538 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 MFSD4AQ8N468 514 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 CPA6Q8N4T0 437 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 SVIPQ8NHG7 77 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 PIWIL2Q8TC59 973 aaKnown RBP4.06□□□□□ -1.76
TRAV28-201ENST00000557548 ENOX1Q8TC92 643 aaKnown RBP4.06□□□□□ -1.76
TRAV28-201ENST00000557548 USP33Q8TEY7 942 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 CLIP3Q96DZ5 547 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 FAXDC2Q96IV6 333 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 CHAMP1Q96JM3 812 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 MYRFLQ96LU7 910 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 LRGUKQ96M69 825 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 HEXIM2Q96MH2 286 aaKnown RBP4.06□□□□□ -1.76
TRAV28-201ENST00000557548 KCNF1Q9H3M0 494 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 TCF7L1Q9HCS4 588 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 CATSPERZQ9NTU4 200 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 GPATCH2Q9NW75 528 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 FBXL7Q9UJT9 491 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 PNMA8BQ9ULN7 279 aaPredicted RBP4.06□□□□□ -1.76
TRAV28-201ENST00000557548 GIT1Q9Y2X7 761 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 CAPN6Q9Y6Q1 641 aa4.06□□□□□ -1.76
TRAV28-201ENST00000557548 WNT9AO14904 365 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 GSTA4O15217 222 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 XPOTO43592 962 aaKnown RBP4.05□□□□□ -1.76
TRAV28-201ENST00000557548 FKTNO75072 461 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 CFBP00751 764 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 U2AF1L5P0DN76 240 aaPredicted RBP4.05□□□□□ -1.76
TRAV28-201ENST00000557548 RBP3P10745 1247 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 SCAND1P57086 179 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 U2AF1Q01081 240 aaKnown RBP eCLIP4.05□□□□□ -1.76
TRAV28-201ENST00000557548 NRG1Q02297 640 aaPredicted RBP4.05□□□□□ -1.76
TRAV28-201ENST00000557548 LAPTM5Q13571 262 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 ODF1Q14990 250 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 UVSSAQ2YD98 709 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 RGL3Q3MIN7 710 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 TMEM240Q5SV17 173 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 PAOXQ6QHF9 649 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 C22orf34Q6ZV56 151 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 C16orf59Q7L2K0 433 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 EPM2AIP1Q7L775 607 aaPredicted RBP4.05□□□□□ -1.76
TRAV28-201ENST00000557548 OTOP1Q7RTM1 612 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 CPNE8Q86YQ8 564 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 FAM20CQ8IXL6 584 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 CMIPQ8IY22 773 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 ARMC10Q8N2F6 343 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 EFHBQ8N7U6 833 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 GIMAP7Q8NHV1 300 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 WFDC12Q8WWY7 111 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 LENG1Q96BZ8 264 aaPredicted RBP4.05□□□□□ -1.76
TRAV28-201ENST00000557548 MMP19Q99542 508 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 KCNJ15Q99712 375 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 ARPC5LQ9BPX5 153 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 SSBP4Q9BWG4 385 aaPredicted RBP4.05□□□□□ -1.76
TRAV28-201ENST00000557548 GPR62Q9BZJ7 368 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 FOXP3Q9BZS1 431 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 ZNF700Q9H0M5 742 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 DUSP15Q9H1R2 295 aaPredicted RBP4.05□□□□□ -1.76
TRAV28-201ENST00000557548 MS4A5Q9H3V2 200 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 PRDM11Q9NQV5 511 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 ANLNQ9NQW6 1124 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 AP5S1Q9NUS5 200 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 MKS1Q9NXB0 559 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 GTF2IRD1Q9UHL9 959 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 ANKRD6Q9Y2G4 727 aa4.05□□□□□ -1.76
TRAV28-201ENST00000557548 TRBV23OR9-2A0A075B6M9 112 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 GNAT3A8MTJ3 354 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 WASH4PA8MWX3 477 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 FAM155AB1AL88 458 aaPredicted RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 H7C1D1 291 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 KCNK3O14649 394 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 FGF10O15520 208 aaPredicted RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 MYO1BO43795 1136 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms