RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 DAGLBQ8NCG7 672 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 KLHDC9Q8NEP7 349 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 DPF3Q92784 378 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 C8orf76Q96K31 380 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 INPP4AQ96PE3 977 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 MXRA8Q9BRK3 442 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 TSEN34Q9BSV6 310 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 MLXIPQ9HAP2 919 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 JADE2Q9NQC1 790 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 PHF24Q9UPV7 400 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 UBIAD1Q9Y5Z9 338 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 MOXD2PA6NHM9 499 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 SPATA31C2B4DYI2 1134 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 CTAGE5O15320 804 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 TGFB3P10600 412 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 ITGB5P18084 799 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 UBA1P22314 1058 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 CST5P28325 142 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 ICAM3P32942 547 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 KRT2P35908 639 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 ARHGAP1Q07960 439 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 LAMC2Q13753 1193 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 NEDD9Q14511 834 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 SAFBQ15424 915 aaKnown RBP eCLIP13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 KRT40Q6A162 431 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 CXCL17Q6UXB2 119 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 KRT25Q7Z3Z0 450 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 CYP2W1Q8TAV3 490 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 AFG1LQ8WV93 481 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 GPRASP2Q96D09 838 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 CDHR1Q96JP9 859 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 GLT1D1Q96MS3 346 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 STARD7Q9NQZ5 370 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 KIF3AQ9Y496 699 aa13.05□□□□□ -0.32
CCDC88C-212ENST00000556767 HTTP42858 3142 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 A0A1W2PQ45 241 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 A0A1W2PQY0 241 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 MMP1P03956 469 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 COL6A1P12109 1028 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 CHMP4BP1P59074 171 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 SP2Q02086 613 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 SP4Q02446 784 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 SEMA3FQ13275 785 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 NONOQ15233 471 aaKnown RBP eCLIP13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 NPY5RQ15761 445 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 CEP55Q53EZ4 464 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 CELF3Q5SZQ8 465 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 PIK3AP1Q6ZUJ8 805 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 PLA2G4DQ86XP0 818 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 OXER1Q8TDS5 423 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 TBCKQ8TEA7 893 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 SPATA33Q96N06 139 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 POLR3EQ9NVU0 708 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 SMC3Q9UQE7 1217 aa13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-212ENST00000556767 NOP56O00567 594 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 MAFGO15525 162 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 MMP3P08254 477 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 CYP3A4P08684 503 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 ARP10275 920 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 NKX3-2P78367 333 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 GNL2Q13823 731 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 INF2Q27J81 1249 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 PRR16Q569H4 304 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 MYSM1Q5VVJ2 828 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 CCSAPQ6IQ19 270 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 CYFIP1Q7L576 1253 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 HSCBQ8IWL3 235 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 DIS3L2Q8IYB7 885 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 GIMAP8Q8ND71 665 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 UIMC1Q96RL1 719 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 KCNH7Q9NS40 1196 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 MYH7BA7E2Y1 1941 aa13.03□□□□□ -0.32
CCDC88C-212ENST00000556767 A6NJR5 290 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 BTBD18B2RXH4 712 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 FAM86B1E9PN63 330 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 M0R2N6 131 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 DDX39AO00148 427 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 MEIS1O00470 390 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 EVI5O60447 810 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 KPNA6O60684 536 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 ATP9AO75110 1047 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 CABYRO75952 493 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 FAM86B2P0C5J1 330 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 GJB2P29033 226 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 USP11P51784 963 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 PSMC6P62333 389 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 NR5A1Q13285 461 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 DGKDQ16760 1214 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 LRRC26Q2I0M4 334 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 METTL7BQ6UX53 244 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 SLC39A5Q6ZMH5 540 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 SENP7Q9BQF6 1050 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 SDF4Q9BRK5 362 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 MTG1Q9BT17 334 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 BCAS3Q9H6U6 928 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 ATP11BQ9Y2G3 1177 aa13.02□□□□□ -0.33
CCDC88C-212ENST00000556767 K7ELQ4 463 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 KCNA2P16389 499 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 RTP1P59025 263 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms