RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 RHOBTB3O94955 611 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 ICA1Q05084 483 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 SEPT2Q15019 361 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 BEND6Q5SZJ8 279 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 KCNK18Q7Z418 384 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 CCDC25Q86WR0 208 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 NEDD1Q8NHV4 660 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 CTNNBL1Q8WYA6 563 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 EMILIN3Q9NT22 766 aa13.39□□□□□ -0.27
CCDC88C-211ENST00000556726 NDUFAB1O14561 156 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 HEXIM1O94992 359 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 ACTN2P35609 894 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 CTTNQ14247 550 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 CFAP221Q4G0U5 840 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 GALNT17Q6IS24 598 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 BCAS4Q8TDM0 211 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 HDAC7Q8WUI4 952 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 SEMA6BQ9H3T3 888 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 DAGLAQ9Y4D2 1042 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 COL4A3BPQ9Y5P4 624 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 ARFGEF2Q9Y6D5 1785 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 KCPQ6ZWJ8 1503 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 PALMO75781 387 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 ZRANB2O95218 330 aaKnown RBP eCLIP13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 SRGNP10124 158 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 PDHBP11177 359 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 LIG3P49916 1009 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 NFIAQ12857 509 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 COASYQ13057 564 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 SHROOM1Q2M3G4 852 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 SBK1Q52WX2 424 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 IRF2BP1Q8IU81 584 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 SH2D3CQ8N5H7 860 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 CCSER1Q9C0I3 900 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 RASSF4Q9H2L5 321 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 ARHGAP25P42331 645 aa13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 DUSP9Q99956 384 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-211ENST00000556726 USP14P54578 494 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 TUBB2AQ13885 445 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 RPS6KA1Q15418 735 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 FOXR1Q6PIV2 292 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 UNC13DQ70J99 1090 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 KIAA0895Q8NCT3 520 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 TBC1D22AQ8WUA7 517 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 TUBB2BQ9BVA1 445 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 PPANQ9NQ55 473 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 RGL1Q9NZL6 768 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 DMGDHQ9UI17 866 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 EBAG9O00559 213 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 PPEF1O14829 653 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 XRCC5P13010 732 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 SH3GLB2Q9NR46 395 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 MTMR4Q9NYA4 1195 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 MYO1AQ9UBC5 1043 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 RRP15Q9Y3B9 282 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 ZSCAN5CA6NGD5 496 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 LAD1O00515 517 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 GFPT2O94808 682 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 IVLP07476 585 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 CDC37Q16543 378 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 QRICH1Q2TAL8 776 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 FAM83BQ5T0W9 1011 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 MIGA2Q7L4E1 593 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 DAAM2Q86T65 1068 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 FAM71BQ8TC56 605 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 RAD54LQ92698 747 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 TNFRSF25Q93038 417 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 PCIF1Q9H4Z3 704 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 POLLQ9UGP5 575 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 PCDHAC2Q9Y5I4 1007 aa13.37□□□□□ -0.27
CCDC88C-211ENST00000556726 PALM3A6NDB9 673 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 BACH1O14867 736 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 GRB10Q13322 594 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 CEP85LQ5SZL2 805 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 PEX26Q7Z412 305 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 PHLDB2Q86SQ0 1253 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 TBC1D16Q8TBP0 767 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 ZMYND12Q9H0C1 365 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 KBTBD4Q9NVX7 518 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 CHORDC1Q9UHD1 332 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 REXO2Q9Y3B8 237 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 JRKLQ9Y4A0 524 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 EEF2P13639 858 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 HS2ST1Q7LGA3 356 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 APTXQ7Z2E3 356 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 SFR1Q86XK3 245 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 SPATA20Q8TB22 786 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 OSBPL9Q96SU4 736 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 TDRD3Q9H7E2 651 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 PDE2AO00408 941 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 EPB41P11171 864 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 PDCLQ13371 301 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 EXOC3L4Q17RC7 722 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 ASPRV1Q53RT3 343 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 WDR59Q6PJI9 974 aa13.36□□□□□ -0.27
CCDC88C-211ENST00000556726 SPATA31A5Q5VU36 1347 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 SPATA31A7Q8IWB4 1347 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 PNMA6FA0A0J9YX94 578 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 ATP8B1O43520 1251 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 OPA1O60313 960 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms