RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 PCDH18Q9HCL0 1135 aa6.37□□□□□ -1.39
PRPF39-210ENST00000556718 C22orf46C9J442 243 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 OVOL3O00110 214 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 U2SURPO15042 1029 aaKnown RBP6.36□□□□□ -1.39
PRPF39-210ENST00000556718 FPR2P25090 351 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 CYP4F3Q08477 520 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 GIMAP6Q6P9H5 292 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 MILR1Q7Z6M3 343 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 ZFPM1Q8IX07 1006 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 FAM126BQ8IXS8 530 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 C19orf47Q8N9M1 422 aaKnown RBP6.36□□□□□ -1.39
PRPF39-210ENST00000556718 TRIM55Q9BYV6 548 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 TSC22D4Q9Y3Q8 395 aa6.36□□□□□ -1.39
PRPF39-210ENST00000556718 CADPSQ9ULU8 1353 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 LAMTOR5O43504 91 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 ZNF28P17035 718 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 SOX9P48436 509 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 HMGA2P52926 109 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 KIAA1211LQ6NV74 962 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 CRIP3Q6Q6R5 217 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 ZC3H18Q86VM9 953 aaKnown RBP6.35□□□□□ -1.39
PRPF39-210ENST00000556718 SEC14L1Q92503 715 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 MBD6Q96DN6 1003 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 MRFAP1L1Q96HT8 127 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 ZSWIM3Q96MP5 696 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 CD248Q9HCU0 757 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 EMC9Q9Y3B6 208 aa6.35□□□□□ -1.39
PRPF39-210ENST00000556718 TLDC2A0PJX2 215 aa6.34□□□□□ -1.39
PRPF39-210ENST00000556718 GPR42O15529 346 aa6.34□□□□□ -1.39
PRPF39-210ENST00000556718 ACVRL1P37023 503 aa6.34□□□□□ -1.39
PRPF39-210ENST00000556718 GDF5P43026 501 aa6.34□□□□□ -1.39
PRPF39-210ENST00000556718 PPP2R5EQ16537 467 aa6.34□□□□□ -1.39
PRPF39-210ENST00000556718 KISS1RQ969F8 398 aaPredicted RBP6.34□□□□□ -1.39
PRPF39-210ENST00000556718 MRIQ9BWK5 157 aa6.34□□□□□ -1.39
PRPF39-210ENST00000556718 KLC2Q9H0B6 622 aa6.34□□□□□ -1.39
PRPF39-210ENST00000556718 ZNF408Q9H9D4 720 aa6.34□□□□□ -1.39
PRPF39-210ENST00000556718 ANKRD34BA5PLL1 514 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 SLC6A11P48066 632 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 BMS1Q14692 1282 aaKnown RBP6.33□□□□□ -1.4
PRPF39-210ENST00000556718 TNNI3KQ59H18 835 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 PRAMEF18Q5VWM3 479 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 ANKS3Q6ZW76 656 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 NLRP10Q86W26 655 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 FRS2Q8WU20 508 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 ANAPC16Q96DE5 110 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 PTPN18Q99952 460 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 ZNF747Q9BV97 191 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 TMEFF2Q9UIK5 374 aaPredicted RBP6.33□□□□□ -1.4
PRPF39-210ENST00000556718 MRVI1Q9Y6F6 885 aa6.33□□□□□ -1.4
PRPF39-210ENST00000556718 C9orf118A6NHY6 69 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 ARNTLO00327 626 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 CLSTN1O94985 981 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 CYP1A1P04798 512 aaPredicted RBP6.32□□□□□ -1.4
PRPF39-210ENST00000556718 MLLT6P55198 1093 aaPredicted RBP6.32□□□□□ -1.4
PRPF39-210ENST00000556718 GTF2IRD2BQ6EKJ0 949 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 ZNF585AQ6P3V2 769 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 GTF2IRD2Q86UP8 949 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 PALM2Q8IXS6 379 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 BVESQ8NE79 360 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 NPLOC4Q8TAT6 608 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 IGDCC4Q8TDY8 1250 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 MKL1Q969V6 931 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 YTHDC1Q96MU7 727 aaKnown RBP6.32□□□□□ -1.4
PRPF39-210ENST00000556718 SIRPGQ9P1W8 387 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 FBXL7Q9UJT9 491 aa6.32□□□□□ -1.4
PRPF39-210ENST00000556718 NPEPPSL1A6NEC2 478 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 IL13P35225 146 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 VHLLQ6RSH7 139 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 CEP68Q76N32 757 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 CCDC103Q8IW40 242 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 DNERQ8NFT8 737 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 OR6P1Q8NGX9 317 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 SHDQ96IW2 340 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 WWC2-AS2Q96NR7 200 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 MENTQ9BUN1 341 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 VPS11Q9H270 941 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 PIF1Q9H611 641 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 PRKAG3Q9UGI9 489 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 WASF3Q9UPY6 502 aa6.31□□□□□ -1.4
PRPF39-210ENST00000556718 AMHP03971 560 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 ETFBP38117 255 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 BCL6P41182 706 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 RPL11P62913 178 aaKnown RBP6.3□□□□□ -1.4
PRPF39-210ENST00000556718 NKX3-2P78367 333 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 SURF1Q15526 300 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 MROH9Q5TGP6 573 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 SDE2Q6IQ49 451 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 RIOX2Q8IUF8 465 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 TRIM59Q8IWR1 403 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 ARRDC4Q8NCT1 418 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 ZCCHC14Q8WYQ9 949 aaKnown RBP6.3□□□□□ -1.4
PRPF39-210ENST00000556718 MRGPRX3Q96LB0 322 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 APBA2Q99767 749 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 CYP26B1Q9NR63 512 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 CDK11AQ9UQ88 783 aaPredicted RBP6.3□□□□□ -1.4
PRPF39-210ENST00000556718 TIMM13Q9Y5L4 95 aaPredicted RBP6.3□□□□□ -1.4
PRPF39-210ENST00000556718 X6R8D5 127 aa6.3□□□□□ -1.4
PRPF39-210ENST00000556718 ANKRD62A6NC57 917 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 CYR61O00622 381 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 PKN3Q6P5Z2 889 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms