RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 KRT40Q6A162 431 aa12.6□□□□□ -0.39
SYNE2-221ENST00000556342 DNERQ8NFT8 737 aa12.6□□□□□ -0.39
SYNE2-221ENST00000556342 ARNTL2Q8WYA1 636 aa12.6□□□□□ -0.39
SYNE2-221ENST00000556342 COPS5Q92905 334 aa12.6□□□□□ -0.39
SYNE2-221ENST00000556342 MPHOSPH6Q99547 160 aaKnown RBP12.6□□□□□ -0.39
SYNE2-221ENST00000556342 FTOQ9C0B1 505 aaKnown RBP eCLIP12.6□□□□□ -0.39
SYNE2-221ENST00000556342 TOMM22Q9NS69 142 aa12.6□□□□□ -0.39
SYNE2-221ENST00000556342 TCP11L1Q9NUJ3 509 aa12.6□□□□□ -0.39
SYNE2-221ENST00000556342 COG5Q9UP83 839 aa12.6□□□□□ -0.39
SYNE2-221ENST00000556342 WDR19Q8NEZ3 1342 aa12.6□□□□□ -0.39
SYNE2-221ENST00000556342 BAIAP3O94812 1187 aa12.59□□□□□ -0.39
SYNE2-221ENST00000556342 PDHBP11177 359 aa12.59□□□□□ -0.39
SYNE2-221ENST00000556342 ALX1Q15699 326 aa12.59□□□□□ -0.39
SYNE2-221ENST00000556342 RRP12Q5JTH9 1297 aaKnown RBP12.59□□□□□ -0.39
SYNE2-221ENST00000556342 SWT1Q5T5J6 900 aaKnown RBP12.59□□□□□ -0.39
SYNE2-221ENST00000556342 FAM122AQ96E09 287 aa12.59□□□□□ -0.39
SYNE2-221ENST00000556342 NOD1Q9Y239 953 aa12.59□□□□□ -0.39
SYNE2-221ENST00000556342 PCDHB15Q9Y5E8 787 aa12.59□□□□□ -0.39
SYNE2-221ENST00000556342 SALL3Q9BXA9 1300 aa12.59□□□□□ -0.39
SYNE2-221ENST00000556342 ARIH2O95376 493 aa12.58□□□□□ -0.4
SYNE2-221ENST00000556342 OATP04181 439 aa12.58□□□□□ -0.4
SYNE2-221ENST00000556342 TXNP10599 105 aaKnown RBP12.58□□□□□ -0.4
SYNE2-221ENST00000556342 ZNF543Q08ER8 600 aa12.58□□□□□ -0.4
SYNE2-221ENST00000556342 SCN5AQ14524 2016 aa12.58□□□□□ -0.4
SYNE2-221ENST00000556342 EVI5LQ96CN4 794 aa12.58□□□□□ -0.4
SYNE2-221ENST00000556342 HELLSQ9NRZ9 838 aa12.58□□□□□ -0.4
SYNE2-221ENST00000556342 TCF20Q9UGU0 1960 aaKnown RBP12.58□□□□□ -0.4
SYNE2-221ENST00000556342 B4DLN1 442 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 TLL1O43897 1013 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 FGAP02671 866 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 SNHG28P0DPA3 235 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 KCNJ6P48051 423 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 MRPL12P52815 198 aaKnown RBP12.57□□□□□ -0.4
SYNE2-221ENST00000556342 GRB10Q13322 594 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 PTGISQ16647 500 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 CCDC62Q6P9F0 684 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 SPRED2Q7Z698 418 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 CAGE1Q8TC20 777 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 AFAP1L1Q8TED9 768 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 HLA-CQ95604 372 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 TTC14Q96N46 770 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 CTAGE1Q96RT6 745 aa12.57□□□□□ -0.4
SYNE2-221ENST00000556342 A0A0D9SFI3 127 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 LCHNA4D1U4 455 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 LPXNO60711 386 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 FECHP22830 423 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 CHMP4BP1P59074 171 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 WDR5P61964 334 aaKnown RBP12.56□□□□□ -0.4
SYNE2-221ENST00000556342 GPNMBQ14956 572 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 USH1GQ495M9 461 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 SESTD1Q86VW0 696 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 CCDC155Q8N6L0 562 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 RGS22Q8NE09 1264 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 AFG1LQ8WV93 481 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 FAM227BQ96M60 508 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 EPHX3Q9H6B9 360 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 TMEM134Q9H6X4 195 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 TANC1Q9C0D5 1861 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 ZMYM6O95789 1325 aa12.56□□□□□ -0.4
SYNE2-221ENST00000556342 TET1Q8NFU7 2136 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 RCCD1A6NED2 376 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 GH1P01241 217 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 MMP3P08254 477 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 PCP11498 1178 aaKnown RBP12.55□□□□□ -0.4
SYNE2-221ENST00000556342 SELPP16109 830 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 HAND2P61296 217 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 ARHGAP1Q07960 439 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 MCMDC2Q4G0Z9 681 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 GPATCH4Q5T3I0 446 aaKnown RBP12.55□□□□□ -0.4
SYNE2-221ENST00000556342 GDF6Q6KF10 455 aaPredicted RBP12.55□□□□□ -0.4
SYNE2-221ENST00000556342 LRRC8DQ7L1W4 858 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 DHX38Q92620 1227 aaKnown RBP12.55□□□□□ -0.4
SYNE2-221ENST00000556342 KAT2BQ92831 832 aa12.55□□□□□ -0.4
SYNE2-221ENST00000556342 RNF40O75150 1001 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 CXCL10P02778 98 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 GOLGA8HP0CJ92 632 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 HSPD1P10809 573 aaKnown RBP12.54□□□□□ -0.4
SYNE2-221ENST00000556342 DEFB103AP81534 67 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 RBL2Q08999 1139 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 LY6KQ17RY6 165 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 CNKSR3Q6P9H4 555 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 MFSD6Q6ZSS7 791 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 SEPT14Q6ZU15 432 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 TMCO2Q7Z6W1 182 aaPredicted RBP12.54□□□□□ -0.4
SYNE2-221ENST00000556342 ZNF589Q86UQ0 364 aaPredicted RBP12.54□□□□□ -0.4
SYNE2-221ENST00000556342 TBC1D10CQ8IV04 446 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 SYTL5Q8TDW5 730 aaPredicted RBP12.54□□□□□ -0.4
SYNE2-221ENST00000556342 GDPD5Q8WTR4 605 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 LRFN3Q9BTN0 628 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 UBA5Q9GZZ9 404 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 MAF1Q9H063 256 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 CPVLQ9H3G5 476 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 LMCD1Q9NZU5 365 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 COL20A1Q9P218 1284 aa12.54□□□□□ -0.4
SYNE2-221ENST00000556342 BRWD1Q9NSI6 2320 aa12.53□□□□□ -0.4
SYNE2-221ENST00000556342 NBNO60934 754 aa12.53□□□□□ -0.4
SYNE2-221ENST00000556342 PARNO95453 639 aaKnown RBP12.53□□□□□ -0.4
SYNE2-221ENST00000556342 CKBP12277 381 aa12.53□□□□□ -0.4
SYNE2-221ENST00000556342 CASTP20810 708 aaKnown RBP12.53□□□□□ -0.4
SYNE2-221ENST00000556342 PDE1AP54750 535 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms