RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SLC6A11P48066 632 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 KRTAP1-1Q07627 177 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 CYP4F3Q08477 520 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 KLF10Q13118 480 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 MROH9Q5TGP6 573 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 GTF2IRD2BQ6EKJ0 949 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 ARHGEF18Q6ZSZ5 1173 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 PLEKHH3Q7Z736 793 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 GTF2IRD2Q86UP8 949 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 C19orf47Q8N9M1 422 aaKnown RBP6.33□□□□□ -1.4
SCFD1-216ENST00000555550 ARRDC4Q8NCT1 418 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 BVESQ8NE79 360 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 PPP1R14AQ96A00 147 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 APBA2Q99767 749 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 CCSER2Q9H7U1 834 aa6.33□□□□□ -1.4
SCFD1-216ENST00000555550 NGRNQ9NPE2 291 aaKnown RBP6.33□□□□□ -1.4
SCFD1-216ENST00000555550 TMEFF2Q9UIK5 374 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-216ENST00000555550 ING1Q9UK53 422 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-216ENST00000555550 TIMM13Q9Y5L4 95 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-216ENST00000555550 SOX9P48436 509 aa6.32□□□□□ -1.4
SCFD1-216ENST00000555550 RPL11P62913 178 aaKnown RBP6.32□□□□□ -1.4
SCFD1-216ENST00000555550 SPDYAQ5MJ70 313 aa6.32□□□□□ -1.4
SCFD1-216ENST00000555550 VHLLQ6RSH7 139 aa6.32□□□□□ -1.4
SCFD1-216ENST00000555550 CPLX3Q8WVH0 158 aa6.32□□□□□ -1.4
SCFD1-216ENST00000555550 CYP26B1Q9NR63 512 aa6.32□□□□□ -1.4
SCFD1-216ENST00000555550 WASF3Q9UPY6 502 aa6.32□□□□□ -1.4
SCFD1-216ENST00000555550 X6R8D5 127 aa6.32□□□□□ -1.4
SCFD1-216ENST00000555550 NOP56O00567 594 aaKnown RBP6.31□□□□□ -1.4
SCFD1-216ENST00000555550 ZNF623O75123 536 aa6.31□□□□□ -1.4
SCFD1-216ENST00000555550 EPHB4P54760 987 aa6.31□□□□□ -1.4
SCFD1-216ENST00000555550 R3HDM1Q15032 1099 aaKnown RBP6.31□□□□□ -1.4
SCFD1-216ENST00000555550 NLRP10Q86W26 655 aa6.31□□□□□ -1.4
SCFD1-216ENST00000555550 RIOX2Q8IUF8 465 aa6.31□□□□□ -1.4
SCFD1-216ENST00000555550 CCDC103Q8IW40 242 aa6.31□□□□□ -1.4
SCFD1-216ENST00000555550 NPLOC4Q8TAT6 608 aa6.31□□□□□ -1.4
SCFD1-216ENST00000555550 ZCCHC14Q8WYQ9 949 aaKnown RBP6.31□□□□□ -1.4
SCFD1-216ENST00000555550 TOE1Q96GM8 510 aaKnown RBP6.31□□□□□ -1.4
SCFD1-216ENST00000555550 CLIC6Q96NY7 704 aa6.31□□□□□ -1.4
SCFD1-216ENST00000555550 INPP5FQ9Y2H2 1132 aa6.31□□□□□ -1.4
SCFD1-216ENST00000555550 PATE3B3GLJ2 98 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 NASPP49321 788 aaPredicted RBP6.3□□□□□ -1.4
SCFD1-216ENST00000555550 PKN3Q6P5Z2 889 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 POMZP3Q6PJE2 187 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 TEPPQ6URK8 271 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 TMEM169Q96HH4 297 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 TGIF2Q9GZN2 237 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 ACBD3Q9H3P7 528 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 FBXL7Q9UJT9 491 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 TCAF1Q9Y4C2 921 aa6.3□□□□□ -1.4
SCFD1-216ENST00000555550 HGSO14964 777 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-216ENST00000555550 LRG1P02750 347 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 IQCEQ6IPM2 695 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 TRMT10BQ6PF06 316 aaKnown RBP6.29□□□□□ -1.4
SCFD1-216ENST00000555550 TRIM59Q8IWR1 403 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 OR6P1Q8NGX9 317 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 Q8TCH9 128 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 RASGRP4Q8TDF6 673 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 DIO2Q92813 273 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 SHDQ96IW2 340 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 MRGPRX3Q96LB0 322 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 NKX2-4Q9H2Z4 354 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 DTLQ9NZJ0 730 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 RBPJLQ9UBG7 517 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 FTSJ1Q9UET6 329 aa6.29□□□□□ -1.4
SCFD1-216ENST00000555550 TCRBV5S2A0A599 114 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 MUSKO15146 869 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 ERCC5P28715 1186 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-216ENST00000555550 ECI1P42126 302 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 SELENOPP49908 381 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 NFATC3Q12968 1075 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 PHF19Q5T6S3 580 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 SLFN13Q68D06 897 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 TMC5Q6UXY8 1006 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 CRACR2BQ8N4Y2 399 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-216ENST00000555550 CHAMP1Q96JM3 812 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 ZNF341Q9BYN7 854 aa6.28□□□□□ -1.4
SCFD1-216ENST00000555550 TBX1O43435 398 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 GJA8P48165 433 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 CASP7P55210 303 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 STEAP3Q658P3 488 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 KLHL36Q8N4N3 616 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 FAM169BQ8N8A8 192 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 RCBTB1Q8NDN9 531 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 BTN2A2Q8WVV5 523 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 ZNF652Q9Y2D9 606 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 COA3Q9Y2R0 106 aaPredicted RBP6.27□□□□□ -1.41
SCFD1-216ENST00000555550 PCDHB4Q9Y5E5 795 aa6.27□□□□□ -1.41
SCFD1-216ENST00000555550 TADA3O75528 432 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 LCP1P13796 627 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 RBM25P49756 843 aaKnown RBP6.26□□□□□ -1.41
SCFD1-216ENST00000555550 RBM10P98175 930 aaKnown RBP6.26□□□□□ -1.41
SCFD1-216ENST00000555550 Q8N1Y9 231 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 NUDT10Q8NFP7 164 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 ZNF428Q96B54 188 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 NUDT11Q96G61 164 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 GNRHR2Q96P88 292 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 MEGF9Q9H1U4 602 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 BARX1Q9HBU1 254 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-216ENST00000555550 CAPN10Q9HC96 672 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 TESMINQ9Y4I5 508 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms