RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 PRPF40AO75400 957 aaKnown RBP12.39□□□□□ -0.43
SHMT2-218ENST00000555213 SGPL1O95470 568 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 TFRCP02786 760 aaKnown RBP12.39□□□□□ -0.43
SHMT2-218ENST00000555213 TGFB3P10600 412 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 GJA8P48165 433 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 SETQ01105 290 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-218ENST00000555213 DUSP28Q4G0W2 176 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 CEP55Q53EZ4 464 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 BRDTQ58F21 947 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-218ENST00000555213 EARS2Q5JPH6 523 aaKnown RBP12.39□□□□□ -0.43
SHMT2-218ENST00000555213 PIK3AP1Q6ZUJ8 805 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 TLK2Q86UE8 772 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 ARRDC4Q8NCT1 418 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 TBCKQ8TEA7 893 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 FOXP1Q9H334 677 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-218ENST00000555213 GDPD2Q9HCC8 539 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 PDGFCQ9NRA1 345 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 RTEL1Q9NZ71 1219 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 Q9Y3F1 56 aa12.39□□□□□ -0.43
SHMT2-218ENST00000555213 KBTBD13C9JR72 458 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 M0R2N6 131 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 MAFGO15525 162 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 GADD45BO75293 160 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-218ENST00000555213 GH1P01241 217 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 MYCNP04198 464 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-218ENST00000555213 CYP3A4P08684 503 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 SMPD1P17405 629 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 TOB1P50616 345 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-218ENST00000555213 USP11P51784 963 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 MRPS9P82933 396 aaKnown RBP12.38□□□□□ -0.43
SHMT2-218ENST00000555213 NBR1Q14596 966 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 ANO1Q5XXA6 986 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 NIPA1Q7RTP0 329 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 NEK8Q86SG6 692 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 RNF180Q86T96 592 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 ANKLE1Q8NAG6 615 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 GIMAP8Q8ND71 665 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-218ENST00000555213 LENG1Q96BZ8 264 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-218ENST00000555213 CRISPLD2Q9H0B8 497 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 JADE2Q9NQC1 790 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 TCEAL9Q9UHQ7 104 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 RCOR1Q9UKL0 485 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 UBIAD1Q9Y5Z9 338 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 TNRC18O15417 2968 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-218ENST00000555213 MCM3APO60318 1980 aa12.38□□□□□ -0.43
SHMT2-218ENST00000555213 SYNRGQ9UMZ2 1314 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-218ENST00000555213 SPATA31C2B4DYI2 1134 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 ZEB2O60315 1214 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 C6orf222P0C671 652 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-218ENST00000555213 GCFC2P16383 781 aaKnown RBP12.37□□□□□ -0.43
SHMT2-218ENST00000555213 ITGB5P18084 799 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 ICAM3P32942 547 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 CPT1AP50416 773 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 SOX10P56693 466 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 NR5A1Q13285 461 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 NEDD9Q14511 834 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 INF2Q27J81 1249 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 LHX8Q68G74 356 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 MOXD1Q6UVY6 613 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 NOSTRINQ8IVI9 506 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 OR6J1Q8NGC5 347 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 CRYGNQ8WXF5 182 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 ZFP91Q96JP5 570 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-218ENST00000555213 USP28Q96RU2 1077 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 MXRA8Q9BRK3 442 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 FTOQ9C0B1 505 aaKnown RBP eCLIP12.37□□□□□ -0.43
SHMT2-218ENST00000555213 OGDHLQ9ULD0 1010 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 NOL7Q9UMY1 257 aaKnown RBP12.37□□□□□ -0.43
SHMT2-218ENST00000555213 GNEQ9Y223 722 aaKnown RBP12.37□□□□□ -0.43
SHMT2-218ENST00000555213 ATP6V1DQ9Y5K8 247 aa12.37□□□□□ -0.43
SHMT2-218ENST00000555213 FAM205CA6NFA0 338 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 DNM1LO00429 736 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 RGS20O76081 388 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 FARP2O94887 1054 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-218ENST00000555213 PGK1P00558 417 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 UBA1P22314 1058 aaKnown RBP12.36□□□□□ -0.43
SHMT2-218ENST00000555213 CIITAP33076 1130 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 GJA9P57773 515 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 LAMC2Q13753 1193 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 FSCN1Q16658 493 aaKnown RBP12.36□□□□□ -0.43
SHMT2-218ENST00000555213 LETM2Q2VYF4 491 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 PRR16Q569H4 304 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 MYSM1Q5VVJ2 828 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 CCDC62Q6P9F0 684 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 BRAPQ7Z569 592 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 PLA2G4DQ86XP0 818 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 DHX37Q8IY37 1157 aaKnown RBP12.36□□□□□ -0.43
SHMT2-218ENST00000555213 PCSK9Q8NBP7 692 aaKnown RBP12.36□□□□□ -0.43
SHMT2-218ENST00000555213 GPT2Q8TD30 523 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 SENP7Q9BQF6 1050 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 SDF4Q9BRK5 362 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 UPF3AQ9H1J1 476 aaKnown RBP12.36□□□□□ -0.43
SHMT2-218ENST00000555213 MLXIPQ9HAP2 919 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 KCNH7Q9NS40 1196 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 DDX41Q9UJV9 622 aaKnown RBP12.36□□□□□ -0.43
SHMT2-218ENST00000555213 CLIC4Q9Y696 253 aa12.36□□□□□ -0.43
SHMT2-218ENST00000555213 POTEFA5A3E0 1075 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 FAM86B1E9PN63 330 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 MEIS1O00470 390 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms