RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 BAG4O95429 457 aaKnown RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 BMP15O95972 392 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 MCM7P33993 719 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 SETQ01105 290 aaPredicted RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 TTLL4Q14679 1199 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 SF3A1Q15459 793 aaKnown RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 COL13A1Q5TAT6 717 aaPredicted RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 MAP3K21Q5TCX8 1036 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 ANO1Q5XXA6 986 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 CCDC62Q6P9F0 684 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 FBXO46Q6PJ61 603 aaPredicted RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 FBXO16Q8IX29 292 aaPredicted RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 SCFD2Q8WU76 684 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 FAM20AQ96MK3 541 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 MTMR9Q96QG7 549 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 SENP7Q9BQF6 1050 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 AGO4Q9HCK5 861 aaKnown RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 PDGFCQ9NRA1 345 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 TBC1D22BQ9NU19 505 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 TFIP11Q9UBB9 837 aaKnown RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 DDX41Q9UJV9 622 aaKnown RBP11.56□□□□□ -0.56
SYNE2-215ENST00000554997 FAM184BQ9ULE4 1060 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 CEP131Q9UPN4 1083 aa11.56□□□□□ -0.56
SYNE2-215ENST00000554997 MSH4O15457 936 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 SLC37A4O43826 429 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 NEMFO60524 1076 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 ATP9AO75110 1047 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 TXNP10599 105 aaKnown RBP11.55□□□□□ -0.56
SYNE2-215ENST00000554997 CYBAP13498 195 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 NASPP49321 788 aaPredicted RBP11.55□□□□□ -0.56
SYNE2-215ENST00000554997 SP2Q02086 613 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 DNM1Q05193 864 aaKnown RBP11.55□□□□□ -0.56
SYNE2-215ENST00000554997 TRIM32Q13049 653 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 PTGDRQ13258 359 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 SEMA3FQ13275 785 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 NBR1Q14596 966 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 SLC39A14Q15043 492 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 CCDC144BQ3MJ40 725 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 SLFN12Q8IYM2 578 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 GIMAP8Q8ND71 665 aaPredicted RBP11.55□□□□□ -0.56
SYNE2-215ENST00000554997 TRPV1Q8NER1 839 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 ETNPPLQ8TBG4 499 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 HAS1Q92839 578 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 SLC5A5Q92911 643 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 USP28Q96RU2 1077 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 RIT2Q99578 217 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 ZNF577Q9BSK1 485 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 KCNMB3Q9NPA1 279 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 POLR3EQ9NVU0 708 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 ZHX1Q9UKY1 873 aaPredicted RBP11.55□□□□□ -0.56
SYNE2-215ENST00000554997 Q9Y3F1 56 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 CLIC4Q9Y696 253 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 MRVI1Q9Y6F6 885 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 PLXNB2O15031 1838 aa11.55□□□□□ -0.56
SYNE2-215ENST00000554997 IPO5O00410 1097 aaKnown RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 NKRFO15226 690 aaKnown RBP eCLIP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 DHX15O43143 795 aaKnown RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 MARCH6O60337 910 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 INHAP05111 366 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 PRKAR2AP13861 404 aaKnown RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 KCNA2P16389 499 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 SMPD1P17405 629 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 ADCYAP1R1P41586 468 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 TNFAIP2Q03169 654 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 NEDD9Q14511 834 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 PTPAQ15257 358 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 CALCRLQ16602 461 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 LY6KQ17RY6 165 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 FOXD4L6Q3SYB3 417 aaPredicted RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 DUSP28Q4G0W2 176 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 ARL6IP4Q66PJ3 421 aaKnown RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 FOXD4L3Q6VB84 417 aaPredicted RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 LINC00301Q8NCQ3 95 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 TNPO1Q92973 898 aaKnown RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 TMEM60Q9H2L4 133 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 RCOR1Q9UKL0 485 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 PCDHA12Q9UN75 941 aa11.54□□□□□ -0.56
SYNE2-215ENST00000554997 MORC2Q9Y6X9 1032 aaPredicted RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 ZNFX1Q9P2E3 1918 aaKnown RBP11.54□□□□□ -0.56
SYNE2-215ENST00000554997 MGAMO43451 1857 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 SEPT4O43236 478 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 PSMD10O75832 226 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 ARIH2O95376 493 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 YEATS4O95619 227 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 AKR1A1P14550 325 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 PRPHP41219 470 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 KRT85P78386 507 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 ATP2C1P98194 919 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-215ENST00000554997 CEBPZQ03701 1054 aaKnown RBP11.53□□□□□ -0.56
SYNE2-215ENST00000554997 ITGB3BPQ13352 177 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-215ENST00000554997 LAMC2Q13753 1193 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 PDIA5Q14554 519 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 SLC9C1Q4G0N8 1177 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 CELF3Q5SZQ8 465 aaKnown RBP11.53□□□□□ -0.56
SYNE2-215ENST00000554997 CLEC17AQ6ZS10 378 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 SH3TC2Q8TF17 1288 aa11.53□□□□□ -0.56
SYNE2-215ENST00000554997 SCAND2PQ9GZW5 306 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-215ENST00000554997 HMX1Q9NP08 348 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-215ENST00000554997 GNEQ9Y223 722 aaKnown RBP11.53□□□□□ -0.56
SYNE2-215ENST00000554997 NFASCO94856 1347 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms