RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 RNPC3Q96LT9 517 aaKnown RBP14.26□□□□□ -0.13
SHMT2-214ENST00000554604 TRPV6Q9H1D0 765 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 HIPK3Q9H422 1215 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 DDX41Q9UJV9 622 aaKnown RBP14.26□□□□□ -0.13
SHMT2-214ENST00000554604 NAP1L2Q9ULW6 460 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-214ENST00000554604 DOCK5Q9H7D0 1870 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 ZBTB43O43298 467 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 B4GALT4O60513 344 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 SUPT20HL2P0C7V6 817 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 CPA1P15085 419 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 CYP2C18P33260 490 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 EXOSC10Q01780 885 aaKnown RBP14.25□□□□□ -0.13
SHMT2-214ENST00000554604 ARHGAP1Q07960 439 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 PKP1Q13835 747 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 NBPF20Q3BBV1 942 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 TMTC3Q6ZXV5 915 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 DHX37Q8IY37 1157 aaKnown RBP14.25□□□□□ -0.13
SHMT2-214ENST00000554604 IL31RAQ8NI17 732 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 RBM28Q9NW13 759 aaKnown RBP14.25□□□□□ -0.13
SHMT2-214ENST00000554604 KAT6AQ92794 2004 aa14.25□□□□□ -0.13
SHMT2-214ENST00000554604 hCG_1642624A0A1W2PR95 340 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 MMP3P08254 477 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 CSF2RAP15509 400 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 EPHB4P54760 987 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 LAMC2Q13753 1193 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 DGKDQ16760 1214 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 GNPTABQ3T906 1256 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 NFRKBQ6P4R8 1299 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 USP17L6PQ6QN14 398 aa14.24□□□□□ -0.13
SHMT2-214ENST00000554604 KLF18A0A0U1RQI7 1052 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 STAM2O75886 525 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 TGFB3P10600 412 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 PDIA4P13667 645 aaKnown RBP14.23□□□□□ -0.13
SHMT2-214ENST00000554604 RTN1Q16799 776 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 Q7L0L9 218 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 HEATR3Q7Z4Q2 680 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 EMID1Q96A84 441 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-214ENST00000554604 ZFP91Q96JP5 570 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-214ENST00000554604 NOC4LQ9BVI4 516 aaKnown RBP14.23□□□□□ -0.13
SHMT2-214ENST00000554604 PSTPIP2Q9H939 334 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 TRMT13Q9NUP7 481 aaKnown RBP14.23□□□□□ -0.13
SHMT2-214ENST00000554604 BRPF3Q9ULD4 1205 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 NOD1Q9Y239 953 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 TCHHQ07283 1943 aa14.23□□□□□ -0.13
SHMT2-214ENST00000554604 SCN5AQ14524 2016 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 GOLGA8AA7E2F4 631 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 GOLGA8BA8MQT2 603 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 PIK3CDO00329 1044 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 SORBS3O60504 671 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 RGS20O76081 388 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 LARGE1O95461 756 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 GGPS1O95749 300 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 CYP2C9P11712 490 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 CCL23P55773 120 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 PTPN11Q06124 597 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-214ENST00000554604 PSRC1Q6PGN9 363 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-214ENST00000554604 PPTC7Q8NI37 304 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 PPP1R13LQ8WUF5 828 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 SPATA33Q96N06 139 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.22□□□□□ -0.132e-16■■□□□ 13.4
SHMT2-214ENST00000554604 MLXIPQ9HAP2 919 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 TPCN1Q9ULQ1 816 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 SMC3Q9UQE7 1217 aa14.22□□□□□ -0.13
SHMT2-214ENST00000554604 FRMPD4Q14CM0 1322 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 UMODL1Q5DID0 1318 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 MEIS2O14770 477 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 ACRP10323 421 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 UBA1P22314 1058 aaKnown RBP14.21□□□□□ -0.13
SHMT2-214ENST00000554604 SMAD3P84022 425 aaKnown RBP14.21□□□□□ -0.13
SHMT2-214ENST00000554604 TOB2Q14106 344 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-214ENST00000554604 ME3Q16798 604 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 CELF3Q5SZQ8 465 aaKnown RBP14.21□□□□□ -0.13
SHMT2-214ENST00000554604 ZNF697Q5TEC3 545 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 MYSM1Q5VVJ2 828 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 Q6ZUG5 572 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 GPKOWQ92917 476 aaPredicted RBP eCLIP14.21□□□□□ -0.13
SHMT2-214ENST00000554604 KATNAL1Q9BW62 490 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 IL23AQ9NPF7 189 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 RTEL1Q9NZ71 1219 aa14.21□□□□□ -0.13
SHMT2-214ENST00000554604 CNTNAP5Q8WYK1 1306 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 CCDC196A0A1B0GTZ2 297 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 SPDYE3A6NKU9 549 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 NOP56O00567 594 aaKnown RBP14.2□□□□□ -0.14
SHMT2-214ENST00000554604 PPFIA4O75335 1185 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 ZNF286BP0CG31 522 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 RCAN1P53805 252 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 NAPAP54920 295 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 MRPS9P82933 396 aaKnown RBP14.2□□□□□ -0.14
SHMT2-214ENST00000554604 APOBRQ0VD83 1088 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 ST3GAL1Q11201 340 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 TMEM240Q5SV17 173 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 PCNX4Q63HM2 1172 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 MCTP1Q6DN14 999 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 FAM109BQ6ICB4 259 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-214ENST00000554604 XRRA1Q6P2D8 792 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 ZNF365Q70YC5 407 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 C16orf59Q7L2K0 433 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 CCDC83Q8IWF9 413 aa14.2□□□□□ -0.14
SHMT2-214ENST00000554604 RPUSD2Q8IZ73 545 aaKnown RBP14.2□□□□□ -0.14
SHMT2-214ENST00000554604 C7orf31Q8N865 590 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms