RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MYH7BA7E2Y1 1941 aa13.3□□□□□ -0.28
CCDC88C-208ENST00000554165 LTBP2Q14767 1821 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 SPATA31C2B4DYI2 1134 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 SOX1O00570 391 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 B4GALT4O60513 344 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 CABYRO75952 493 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 LARGE1O95461 756 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 CD4P01730 458 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 ZNF286BP0CG31 522 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 FXR1P51114 621 aaKnown RBP eCLIP13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 AK2P54819 239 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 ANAPC15P60006 121 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 JAKMIP3Q5VZ66 844 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 CYP2W1Q8TAV3 490 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 ZNF274Q96GC6 653 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 SPATA33Q96N06 139 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 AIFM3Q96NN9 605 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 LBHD1Q9BQE6 289 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 PPP1R12CQ9BZL4 782 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 TRMT13Q9NUP7 481 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 POLR3EQ9NVU0 708 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 PKD2L1Q9P0L9 805 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 UMODL1Q5DID0 1318 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 SCN10AQ9Y5Y9 1956 aa13.29□□□□□ -0.28
CCDC88C-208ENST00000554165 DOCK5Q9H7D0 1870 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 SPDYE3A6NKU9 549 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 ATP9AO75110 1047 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 CYP2C9P11712 490 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 RAG1P15918 1043 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 CYP2C18P33260 490 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 BMP8BP34820 402 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 CLK2P49760 499 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 SP4Q02446 784 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 SCRN1Q12765 414 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 LAMC2Q13753 1193 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 C9orf50Q5SZB4 431 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 PPP1R18Q6NYC8 613 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 CYFIP1Q7L576 1253 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 NECAB1Q8N987 351 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 PPTC7Q8NI37 304 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 RASGRP4Q8TDF6 673 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 EMID1Q96A84 441 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 IL17RAQ96F46 866 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 ANO3Q9BYT9 981 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 ALDH8A1Q9H2A2 487 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 VPS54Q9P1Q0 977 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 UBIAD1Q9Y5Z9 338 aa13.28□□□□□ -0.28
CCDC88C-208ENST00000554165 TGFB3P10600 412 aa13.27□□□□□ -0.29
CCDC88C-208ENST00000554165 ICAM3P32942 547 aa13.27□□□□□ -0.29
CCDC88C-208ENST00000554165 CACNB1Q02641 598 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-208ENST00000554165 BRDTQ58F21 947 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-208ENST00000554165 FAM47CQ5HY64 1035 aa13.27□□□□□ -0.29
CCDC88C-208ENST00000554165 UIMC1Q96RL1 719 aa13.27□□□□□ -0.29
CCDC88C-208ENST00000554165 RNF26Q9BY78 433 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-208ENST00000554165 MLXIPQ9HAP2 919 aa13.27□□□□□ -0.29
CCDC88C-208ENST00000554165 LAMA3Q16787 3333 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 hCG_1984214I3L0E3 225 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 CPLX1O14810 134 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 FIBPO43427 364 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 KPNA6O60684 536 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 CTDNEP1O95476 244 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 TIMP1P01033 207 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 ARP10275 920 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 PSEN2P49810 448 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 NEK4P51957 841 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 AKAP17AQ02040 695 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 SSRP1Q08945 709 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 HIC1Q14526 733 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 SHHQ15465 462 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 DGKDQ16760 1214 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 MROH7Q68CQ1 1323 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 XRRA1Q6P2D8 792 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 KCNV1Q6PIU1 500 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 TRIM50Q86XT4 487 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 ZNF713Q8N859 430 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 LRCH3Q96II8 777 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 CTAGE1Q96RT6 745 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 KIF2CQ99661 725 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 ALG1Q9BT22 464 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 ZMYND12Q9H0C1 365 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 GJB4Q9NTQ9 266 aa13.26□□□□□ -0.29
CCDC88C-208ENST00000554165 ESYT2A0FGR8 921 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 TLR3O15455 904 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 PFKFB2O60825 505 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 STAM2O75886 525 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 HOXD8P13378 290 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 CSF2RAP15509 400 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 KCNA2P16389 499 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 CCL23P55773 120 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 ZNF200P98182 395 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 ME3Q16798 604 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 GNPTABQ3T906 1256 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 GDF6Q6KF10 455 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 C16orf59Q7L2K0 433 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 NLRX1Q86UT6 975 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 TDHQ8IZJ6 230 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 GPRASP2Q96D09 838 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 C16orf70Q9BSU1 422 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 NOC4LQ9BVI4 516 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 SLKQ9H2G2 1235 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms