RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 IFNL3Q8IZI9 196 aa12.43□□□□□ -0.42
VPS29-208ENST00000550267 ZBTB40Q9NUA8 1239 aa12.43□□□□□ -0.42
VPS29-208ENST00000550267 LCTP09848 1927 aa12.43□□□□□ -0.42
VPS29-208ENST00000550267 RBM47A0AV96 593 aaKnown RBP12.42□□□□□ -0.42
VPS29-208ENST00000550267 PATL2C9JE40 543 aaKnown RBP12.42□□□□□ -0.42
VPS29-208ENST00000550267 BAIAP3O94812 1187 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 GNAT2P19087 354 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 KCNJ6P48051 423 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 PDE4BQ07343 736 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 FOXC1Q12948 553 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 LRRCC1Q9C099 1032 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 ADD3Q9UEY8 706 aaKnown RBP12.42□□□□□ -0.42
VPS29-208ENST00000550267 STX8Q9UNK0 236 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 MTMR7Q9Y216 660 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 TANC1Q9C0D5 1861 aa12.42□□□□□ -0.42
VPS29-208ENST00000550267 DDX11L8A8MPP1 907 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 RBAK-RBAKDNI3L0D1 243 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 NFIBO00712 420 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 TRANK1O15050 2925 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 ST8SIA5O15466 376 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 CD2BP2O95400 341 aaKnown RBP12.41□□□□□ -0.42
VPS29-208ENST00000550267 ICAM1P05362 532 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 GCGRP47871 477 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 CHMP4BP1P59074 171 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 WDR5P61964 334 aaKnown RBP12.41□□□□□ -0.42
VPS29-208ENST00000550267 MYO9BQ13459 2157 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 BFSP2Q13515 415 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 TSHZ3Q63HK5 1081 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 NFRKBQ6P4R8 1299 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 COPS5Q92905 334 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 UBE2ZQ9H832 354 aaPredicted RBP12.41□□□□□ -0.42
VPS29-208ENST00000550267 ECHDC1Q9NTX5 307 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 LMCD1Q9NZU5 365 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 MTUS1Q9ULD2 1270 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 DDX19BQ9UMR2 479 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 NOD1Q9Y239 953 aa12.41□□□□□ -0.42
VPS29-208ENST00000550267 FCF1Q9Y324 198 aaKnown RBP12.41□□□□□ -0.42
VPS29-208ENST00000550267 PRRC2BQ5JSZ5 2229 aaKnown RBP12.41□□□□□ -0.42
VPS29-208ENST00000550267 PTPDC1A2A3K4 754 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 NMT2O60551 498 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 CALML3P27482 149 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 SLC16A2P36021 539 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 DEFB103AP81534 67 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 HNRNPUQ00839 825 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS29-208ENST00000550267 PTPN11Q06124 597 aaPredicted RBP12.4□□□□□ -0.42
VPS29-208ENST00000550267 PPARAQ07869 468 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 GPNMBQ14956 572 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 BRDTQ58F21 947 aaPredicted RBP12.4□□□□□ -0.42
VPS29-208ENST00000550267 TTBK2Q6IQ55 1244 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 SLC30A10Q6XR72 485 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 CRIPAKQ8N1N5 446 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 FAM160A2Q8N612 972 aaPredicted RBP12.4□□□□□ -0.42
VPS29-208ENST00000550267 SEC62Q99442 399 aaKnown RBP12.4□□□□□ -0.42
VPS29-208ENST00000550267 RANBP17Q9H2T7 1088 aaKnown RBP12.4□□□□□ -0.42
VPS29-208ENST00000550267 INCENPQ9NQS7 918 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 IL17RBQ9NRM6 502 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 SLC27A5Q9Y2P5 690 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 PTPRSQ13332 1948 aa12.4□□□□□ -0.42
VPS29-208ENST00000550267 RAD50Q92878 1312 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.39□□□□□ -0.43
VPS29-208ENST00000550267 A6NJR5 290 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 PRR33A8MZF0 331 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 KPNA6O60684 536 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 ZFYP08048 801 aaPredicted RBP12.39□□□□□ -0.43
VPS29-208ENST00000550267 SLC3A2P08195 630 aaKnown RBP12.39□□□□□ -0.43
VPS29-208ENST00000550267 MS4A1P11836 297 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 IL9P15248 144 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 PDE4DQ08499 809 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 PPP2R5BQ15173 497 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 PTGISQ16647 500 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 CCDC96Q2M329 555 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 TCTN1Q2MV58 587 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 FAM178BQ8IXR5 827 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 GJD3Q8N144 294 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.39□□□□□ -0.43
VPS29-208ENST00000550267 AFAP1L1Q8TED9 768 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 CTAGE1Q96RT6 745 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 NACAP1Q9BZK3 213 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 NAPBQ9H115 298 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 SUGCTQ9HAC7 445 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 TOR4AQ9NXH8 423 aa12.39□□□□□ -0.43
VPS29-208ENST00000550267 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS29-208ENST00000550267 LOC102724159A0A0B4J2E5 919 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 TSPY2A6NKD2 308 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 NKRFO15226 690 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS29-208ENST00000550267 KCNA5P22460 613 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 PWP2Q15269 919 aaKnown RBP12.38□□□□□ -0.43
VPS29-208ENST00000550267 LRRFIP1Q32MZ4 808 aaKnown RBP12.38□□□□□ -0.43
VPS29-208ENST00000550267 LEXMQ3ZCV2 418 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 GDF6Q6KF10 455 aaPredicted RBP12.38□□□□□ -0.43
VPS29-208ENST00000550267 CNKSR3Q6P9H4 555 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 LRRC8DQ7L1W4 858 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 CCDC155Q8N6L0 562 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 DCAF4Q8WV16 495 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 CLEC4DQ8WXI8 215 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 DHX38Q92620 1227 aaKnown RBP12.38□□□□□ -0.43
VPS29-208ENST00000550267 UIMC1Q96RL1 719 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 TGS1Q96RS0 853 aaKnown RBP12.38□□□□□ -0.43
VPS29-208ENST00000550267 SCN10AQ9Y5Y9 1956 aa12.38□□□□□ -0.43
VPS29-208ENST00000550267 LINC01553A4QN01 128 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms