RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 A0A1W2PRG0 241 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 MYL1P05976 194 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 QRICH1Q2TAL8 776 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 TBC1D16Q8TBP0 767 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 FAM204AQ9H8W3 233 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 RIC8AQ9NPQ8 531 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 PCDHA13Q9Y5I0 950 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 GFPT2O94808 682 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 GCFC2P16383 781 aaKnown RBP17.2■□□□□ 0.34
CUX1-211ENST00000546411 ZNF577Q9BSK1 485 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 DAGLAQ9Y4D2 1042 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 FLT1P17948 1338 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 AFF2P51816 1311 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 LRRC53A6NM62 1247 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 FOSP01100 380 aaPredicted RBP17.2■□□□□ 0.34
CUX1-211ENST00000546411 EVX2Q03828 476 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 NR1I3Q14994 352 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 UNC13DQ70J99 1090 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 CNKSR1Q969H4 720 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 NBPF3Q9H094 633 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 MTUS1Q9ULD2 1270 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 UTP11Q9Y3A2 253 aaKnown RBP17.2■□□□□ 0.34
CUX1-211ENST00000546411 MRPL11Q9Y3B7 192 aaKnown RBP17.2■□□□□ 0.34
CUX1-211ENST00000546411 BCRP11274 1271 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 TNNI1P19237 187 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 SYDE2Q5VT97 1194 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 NLRX1Q86UT6 975 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 KSR1Q8IVT5 923 aa17.2■□□□□ 0.34
CUX1-211ENST00000546411 SCAF8Q9UPN6 1271 aaKnown RBP17.2■□□□□ 0.34
CUX1-211ENST00000546411 DLG5Q8TDM6 1919 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 VEGFAP15692 232 aaPredicted RBP17.19■□□□□ 0.34
CUX1-211ENST00000546411 SEC23AQ15436 765 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 KRT71Q3SY84 523 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 CEP85LQ5SZL2 805 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 EPB41L5Q9HCM4 733 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 CASP8Q14790 479 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 WDR44Q5JSH3 913 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 CCDC105Q8IYK2 499 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 FAM186BQ8IYM0 893 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 MTRF1LQ9UGC7 380 aaKnown RBP17.19■□□□□ 0.34
CUX1-211ENST00000546411 AMFRQ9UKV5 643 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 BCS1LQ9Y276 419 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 SALL1Q9NSC2 1324 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 F5H6K3 240 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 STAT2P52630 851 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 GFPT1Q06210 699 aaPredicted RBP17.19■□□□□ 0.34
CUX1-211ENST00000546411 KLRC3Q07444 240 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 CC2D1AQ6P1N0 951 aaPredicted RBP17.19■□□□□ 0.34
CUX1-211ENST00000546411 VGLL2Q8N8G2 317 aa17.19■□□□□ 0.34
CUX1-211ENST00000546411 ANKRD65E5RJM6 399 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 IFT74Q96LB3 600 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 SH2D3AQ9BRG2 576 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 ZBED4O75132 1171 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 GYPCP04921 128 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 NYAP1Q6ZVC0 841 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 ARFGAP2Q8N6H7 521 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 PAF1Q8N7H5 531 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 GCNT4Q9P109 453 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 ASIC3Q9UHC3 531 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 NPR1P16066 1061 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 KLK7P49862 253 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 PPANQ9NQ55 473 aaKnown RBP17.18■□□□□ 0.34
CUX1-211ENST00000546411 MTMR4Q9NYA4 1195 aa17.18■□□□□ 0.34
CUX1-211ENST00000546411 NPHP3-ACAD11A0A0J9YXS1 232 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 NCK2O43639 380 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 TADA3O75528 432 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 ARHGAP4P98171 946 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 SFR1Q86XK3 245 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 IPO4Q8TEX9 1081 aaKnown RBP17.17■□□□□ 0.34
CUX1-211ENST00000546411 DHX36Q9H2U1 1008 aaKnown RBP17.17■□□□□ 0.34
CUX1-211ENST00000546411 ANKRD26Q9UPS8 1709 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 HEXIM1O94992 359 aaKnown RBP17.17■□□□□ 0.34
CUX1-211ENST00000546411 AFPP02771 609 aaKnown RBP17.17■□□□□ 0.34
CUX1-211ENST00000546411 DESP17661 470 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 AOC3Q16853 763 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 SBK1Q52WX2 424 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 SUPT20HQ8NEM7 779 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 IQCDQ96DY2 449 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 TEKT3Q9BXF9 490 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 PPFIA1Q13136 1202 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 TERF2Q15554 542 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 PKN1Q16512 942 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 ARHGEF16Q5VV41 709 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 CCDC170Q8IYT3 715 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 ADSSL1Q8N142 457 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 BBXQ8WY36 941 aaPredicted RBP17.17■□□□□ 0.34
CUX1-211ENST00000546411 METTL14Q9HCE5 456 aaKnown RBP17.17■□□□□ 0.34
CUX1-211ENST00000546411 TSKSQ9UJT2 592 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 LRRC63Q05C16 580 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 COASYQ13057 564 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 GJD4Q96KN9 370 aaPredicted RBP17.17■□□□□ 0.34
CUX1-211ENST00000546411 PACSIN2Q9UNF0 486 aaPredicted RBP17.17■□□□□ 0.34
CUX1-211ENST00000546411 JRKLQ9Y4A0 524 aa17.17■□□□□ 0.34
CUX1-211ENST00000546411 NWD1Q149M9 1564 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 STXBP3O00186 592 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 GNGT1P63211 74 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 COL5A2P05997 1499 aaPredicted RBP17.16■□□□□ 0.34
CUX1-211ENST00000546411 PEAK1Q9H792 1746 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 RNF40O75150 1001 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 EIF2AK2P19525 551 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms