RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	UBE2S	Q16763	222 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	CELF3	Q5SZQ8	465 aa	Known RBP	13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	MYSM1	Q5VVJ2	828 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	SH3RF1	Q7Z6J0	888 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	FAM126B	Q8IXS8	530 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	PPTC7	Q8NI37	304 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	AFG1L	Q8WV93	481 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	PHKB	Q93100	1093 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	ZMYND12	Q9H0C1	365 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	NCOA5	Q9HCD5	579 aa	Known RBP	13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	TBX21	Q9UL17	535 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	PCDHA6	Q9UN73	950 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	PCDHA8	Q9Y5H6	950 aa		13.62	□□□□□ -0.23
YBX3-217	ENST00000546164	SMCO2	A6NFE2	343 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	CD4	P01730	458 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	MYL3	P08590	195 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	CLK2	P49760	499 aa	Known RBP	13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	CCT2	P78371	535 aa	Known RBP	13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	AKAP17A	Q02040	695 aa	Known RBP	13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	SP2	Q02086	613 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	SEMA3F	Q13275	785 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	ANKRD1	Q15327	319 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	DHX37	Q8IY37	1157 aa	Known RBP	13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	GPRASP2	Q96D09	838 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	SENP7	Q9BQF6	1050 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	EHMT1	Q9H9B1	1298 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	TMEM39A	Q9NV64	488 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	SCN10A	Q9Y5Y9	1956 aa		13.61	□□□□□ -0.23
YBX3-217	ENST00000546164	TLR3	O15455	904 aa	Known RBP	13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	GGPS1	O95749	300 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	PSMC6	P62333	389 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	NEDD9	Q14511	834 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	DGKD	Q16760	1214 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	MCTP2	Q6DN12	878 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	CPLX2	Q6PUV4	134 aa	Known RBP	13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	NLRX1	Q86UT6	975 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	TRIM22	Q8IYM9	498 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	FAM177A1	Q8N128	213 aa	Predicted RBP	13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	ZFP91	Q96JP5	570 aa	Predicted RBP	13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	CDHR1	Q96JP9	859 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	SLC26A6	Q9BXS9	759 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	ANO3	Q9BYT9	981 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	SH3GLB2	Q9NR46	395 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	RTEL1	Q9NZ71	1219 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	UBIAD1	Q9Y5Z9	338 aa		13.6	□□□□□ -0.23
YBX3-217	ENST00000546164	CPLX1	O14810	134 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	MAFG	O15525	162 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	PFKFB2	O60825	505 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	PPFIA4	O75335	1185 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	ITGB5	P18084	799 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	ITGB8	P26012	769 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	GNA11	P29992	359 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	SREBF1	P36956	1147 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	AK2	P54819	239 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	MDM2	Q00987	491 aa	Predicted RBP	13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	PTPN11	Q06124	597 aa	Predicted RBP	13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	HSDL1	Q3SXM5	330 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	NFRKB	Q6P4R8	1299 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	METTL7B	Q6UX53	244 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	CCDC148	Q8NFR7	591 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	KAT2B	Q92831	832 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	SPATA33	Q96N06	139 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	LARP6	Q9BRS8	491 aa	Known RBP	13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	UBE2O	Q9C0C9	1292 aa	Known RBP	13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	C6orf50	Q9HD87	102 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	TPCN1	Q9ULQ1	816 aa		13.59	□□□□□ -0.23
YBX3-217	ENST00000546164	LTBP2	Q14767	1821 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	CDKL5	O76039	1030 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	DEXI	O95424	95 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	F2	P00734	622 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	TIMP1	P01033	207 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	RAG1	P15918	1043 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	SSRP1	Q08945	709 aa	Known RBP	13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	SCRN1	Q12765	414 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	NBPF20	Q3BBV1	942 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	SESTD1	Q86VW0	696 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	TDH	Q8IZJ6	230 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	CRYGN	Q8WXF5	182 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	BAD	Q92934	168 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	SLK	Q9H2G2	1235 aa	Predicted RBP	13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	MLXIP	Q9HAP2	919 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	JADE2	Q9NQC1	790 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	PCDH10	Q9P2E7	1040 aa		13.58	□□□□□ -0.24
YBX3-217	ENST00000546164	HAS3	O00219	553 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	B4GALT4	O60513	344 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	SUPT20HL2	P0C7V6	817 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	KCNA2	P16389	499 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	NEK4	P51957	841 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	STK3	Q13188	491 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	MTMR1	Q13613	665 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	REXO1	Q8N1G1	1221 aa	Known RBP	13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	BICD2	Q8TD16	824 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	MXRA8	Q9BRK3	442 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	KATNAL1	Q9BW62	490 aa		13.57	□□□□□ -0.24
YBX3-217	ENST00000546164	TRPV6	Q9H1D0	765 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms