RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 ICAM3P32942 547 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 NEDD9Q14511 834 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 ANKRD1Q15327 319 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 NTRK3Q16288 839 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 CPLX2Q6PUV4 134 aaKnown RBP18.02■□□□□ 0.48
CCDC78-216ENST00000544996 TRIM22Q8IYM9 498 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 PHKBQ93100 1093 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 CDHR1Q96JP9 859 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 SPATA33Q96N06 139 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 SLC26A6Q9BXS9 759 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 NCOA5Q9HCD5 579 aaKnown RBP18.02■□□□□ 0.48
CCDC78-216ENST00000544996 PCDH10Q9P2E7 1040 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 TBX21Q9UL17 535 aa18.02■□□□□ 0.48
CCDC78-216ENST00000544996 DNAH12Q6ZR08 3092 aa18.02■□□□□ 0.47
CCDC78-216ENST00000544996 TIMP1P01033 207 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 CD4P01730 458 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 SUPT20HL2P0C7V6 817 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 CHMP4BP1P59074 171 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 SP2Q02086 613 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 NBPF20Q3BBV1 942 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 FAM47CQ5HY64 1035 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 NFRKBQ6P4R8 1299 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 LARP6Q9BRS8 491 aaKnown RBP18.01■□□□□ 0.47
CCDC78-216ENST00000544996 ALDH8A1Q9H2A2 487 aaPredicted RBP18.01■□□□□ 0.47
CCDC78-216ENST00000544996 C6orf50Q9HD87 102 aa18.01■□□□□ 0.47
CCDC78-216ENST00000544996 ESYT2A0FGR8 921 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 NOP56O00567 594 aaKnown RBP18■□□□□ 0.47
CCDC78-216ENST00000544996 SORBS3O60504 671 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 B4GALT4O60513 344 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 PPFIA4O75335 1185 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 ITGB8P26012 769 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 GNA11P29992 359 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 PTPN11Q06124 597 aaPredicted RBP18■□□□□ 0.47
CCDC78-216ENST00000544996 SSRP1Q08945 709 aaKnown RBP18■□□□□ 0.47
CCDC78-216ENST00000544996 STK3Q13188 491 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 AP3B2Q13367 1082 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 MCTP2Q6DN12 878 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 GIMAP8Q8ND71 665 aaPredicted RBP18■□□□□ 0.47
CCDC78-216ENST00000544996 GPRASP2Q96D09 838 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 KATNAL1Q9BW62 490 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 TRPV6Q9H1D0 765 aa18■□□□□ 0.47
CCDC78-216ENST00000544996 MAFGO15525 162 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 PPFIA3O75145 1194 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 SEC24BO95487 1268 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 FXR1P51114 621 aaKnown RBP eCLIP17.99■□□□□ 0.47
CCDC78-216ENST00000544996 FPGSQ05932 587 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 PKN1Q16512 942 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 METTL7BQ6UX53 244 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 CCDC148Q8NFR7 591 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 BICD2Q8TD16 824 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 IL17RAQ96F46 866 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 SENP7Q9BQF6 1050 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 ANO3Q9BYT9 981 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 ZMYND12Q9H0C1 365 aa17.99■□□□□ 0.47
CCDC78-216ENST00000544996 SLKQ9H2G2 1235 aaPredicted RBP17.99■□□□□ 0.47
CCDC78-216ENST00000544996 CDKL5O76039 1030 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 MTMR1Q13613 665 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 HSDL1Q3SXM5 330 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 MFSD5Q6N075 450 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 CYFIP1Q7L576 1253 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 REXO1Q8N1G1 1221 aaKnown RBP17.98■□□□□ 0.47
CCDC78-216ENST00000544996 TMEM199Q8N511 208 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 PPP1R12CQ9BZL4 782 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 HIPK3Q9H422 1215 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 TRMT13Q9NUP7 481 aaKnown RBP17.98■□□□□ 0.47
CCDC78-216ENST00000544996 UBIAD1Q9Y5Z9 338 aa17.98■□□□□ 0.47
CCDC78-216ENST00000544996 HOXD8P13378 290 aaPredicted RBP17.97■□□□□ 0.47
CCDC78-216ENST00000544996 ITGB5P18084 799 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 CLK2P49760 499 aaKnown RBP17.97■□□□□ 0.47
CCDC78-216ENST00000544996 SEMA3FQ13275 785 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 JAKMIP3Q5VZ66 844 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 C7orf31Q8N865 590 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 KAT2BQ92831 832 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 PGBD1Q96JS3 809 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 JADE2Q9NQC1 790 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 SH3GLB2Q9NR46 395 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 TMEM260Q9NX78 707 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 TPCN1Q9ULQ1 816 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 NOD1Q9Y239 953 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 KIAA1217Q5T5P2 1943 aa17.97■□□□□ 0.47
CCDC78-216ENST00000544996 DEXIO95424 95 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 F2P00734 622 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 ZNF286BP0CG31 522 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 ZNF76P36508 570 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 SREBF1P36956 1147 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 PSEN2P49810 448 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 NEK4P51957 841 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 AK2P54819 239 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 PPIGQ13427 754 aaKnown RBP eCLIP17.96■□□□□ 0.47
CCDC78-216ENST00000544996 MFSD10Q14728 455 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 LRIT3Q3SXY7 679 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 SESTD1Q86VW0 696 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 MXRA8Q9BRK3 442 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 VPS54Q9P1Q0 977 aa17.96■□□□□ 0.47
CCDC78-216ENST00000544996 PFKFB2O60825 505 aa17.95■□□□□ 0.46
CCDC78-216ENST00000544996 CYP2C18P33260 490 aa17.95■□□□□ 0.46
CCDC78-216ENST00000544996 NLRP5P59047 1200 aa17.95■□□□□ 0.46
CCDC78-216ENST00000544996 SCRN1Q12765 414 aa17.95■□□□□ 0.46
CCDC78-216ENST00000544996 KIAA0753Q2KHM9 967 aa17.95■□□□□ 0.46
CCDC78-216ENST00000544996 C8orf34Q49A92 452 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms