RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TDRD3Q9H7E2 651 aaKnown RBP20.02■□□□□ 0.8
VIM-209ENST00000544301 BMP2KQ9NSY1 1161 aaPredicted RBP20.02■□□□□ 0.8
VIM-209ENST00000544301 MYO6Q9UM54 1294 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 SLC26A4O43511 780 aa20.02■□□□□ 0.79
VIM-209ENST00000544301 ATP8B1O43520 1251 aa20.02■□□□□ 0.79
VIM-209ENST00000544301 NDUFB10O96000 172 aa20.02■□□□□ 0.79
VIM-209ENST00000544301 SSBP05455 408 aaKnown RBP eCLIP20.02■□□□□ 0.79
VIM-209ENST00000544301 CHRNA5P30532 468 aa20.02■□□□□ 0.79
VIM-209ENST00000544301 MOXD1Q6UVY6 613 aa20.02■□□□□ 0.79
VIM-209ENST00000544301 KIAA1328Q86T90 577 aa20.02■□□□□ 0.79
VIM-209ENST00000544301 AMNQ9BXJ7 453 aa20.02■□□□□ 0.79
VIM-209ENST00000544301 POTEB3A0JP26 581 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 POTECB2RU33 542 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 PLA2G4BP0C869 781 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 HNRNPH3P31942 346 aaKnown RBP20.01■□□□□ 0.79
VIM-209ENST00000544301 PLA2G4AP47712 749 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 JAG1P78504 1218 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 ARHGAP4P98171 946 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 ZCWPW2Q504Y3 356 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 FAM26FQ5R3K3 315 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 POTEBQ6S5H4 581 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 SLFN12Q8IYM2 578 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 JAKMIP2Q96AA8 810 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 ANKZF1Q9H8Y5 726 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 ATRNL1Q5VV63 1379 aa20.01■□□□□ 0.79
VIM-209ENST00000544301 EPHB6O15197 1021 aa20■□□□□ 0.79
VIM-209ENST00000544301 TBC1D8O95759 1140 aa20■□□□□ 0.79
VIM-209ENST00000544301 STAT3P40763 770 aa20■□□□□ 0.79
VIM-209ENST00000544301 TUBB4BP68371 445 aa20■□□□□ 0.79
VIM-209ENST00000544301 C7orf43Q8WVR3 580 aa20■□□□□ 0.79
VIM-209ENST00000544301 RCCD1A6NED2 376 aa20■□□□□ 0.79
VIM-209ENST00000544301 ENTPD3O75355 529 aa20■□□□□ 0.79
VIM-209ENST00000544301 SYDE2Q5VT97 1194 aa20■□□□□ 0.79
VIM-209ENST00000544301 MCTP2Q6DN12 878 aa20■□□□□ 0.79
VIM-209ENST00000544301 CCDC84Q86UT8 332 aaPredicted RBP20■□□□□ 0.79
VIM-209ENST00000544301 FBXO11Q86XK2 927 aa20■□□□□ 0.79
VIM-209ENST00000544301 CCDC65Q8IXS2 484 aa20■□□□□ 0.79
VIM-209ENST00000544301 ETNPPLQ8TBG4 499 aa20■□□□□ 0.79
VIM-209ENST00000544301 ARFGAP3Q9NP61 516 aa20■□□□□ 0.79
VIM-209ENST00000544301 FAM207AQ9NSI2 230 aaPredicted RBP20■□□□□ 0.79
VIM-209ENST00000544301 PLAGL2Q9UPG8 496 aa20■□□□□ 0.79
VIM-209ENST00000544301 PCDHA2Q9Y5H9 948 aa20■□□□□ 0.79
VIM-209ENST00000544301 KRT86O43790 486 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 MED24O75448 989 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 IPO7O95373 1038 aaKnown RBP19.99■□□□□ 0.79
VIM-209ENST00000544301 GH2P01242 217 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 TRAPPC11Q7Z392 1133 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 GPBP1Q86WP2 473 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 FGFBP2Q9BYJ0 223 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 LACRTQ9GZZ8 138 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 MMRN2Q9H8L6 949 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 ST7Q9NRC1 585 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 NPHP3-ACAD11A0A0J9YXS1 232 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 CTAGE15A4D2H0 777 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 SASH3O75995 380 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 CTAGE8P0CG41 777 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 FKBP3Q00688 224 aaKnown RBP19.99■□□□□ 0.79
VIM-209ENST00000544301 IKQ13123 557 aaPredicted RBP19.99■□□□□ 0.79
VIM-209ENST00000544301 RRP1BQ14684 758 aaKnown RBP19.99■□□□□ 0.79
VIM-209ENST00000544301 BRD3Q15059 726 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 USH1GQ495M9 461 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 CTAGE6Q86UF2 777 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 CTAGE4Q8IX94 777 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 MSANTD4Q8NCY6 345 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 CNKSR1Q969H4 720 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 TBC1D7Q9P0N9 293 aa19.99■□□□□ 0.79
VIM-209ENST00000544301 CCDC151A5D8V7 595 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 POTEB2H3BUK9 544 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 BMP3P12645 472 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 CYP11B2P19099 503 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 MMP14P50281 582 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 SPIRE1Q08AE8 756 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 Q4G0T1 1027 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 PRR16Q569H4 304 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 RBM26Q5T8P6 1007 aaKnown RBP19.98■□□□□ 0.79
VIM-209ENST00000544301 EHBP1Q8NDI1 1231 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 PRMT6Q96LA8 375 aaPredicted RBP19.98■□□□□ 0.79
VIM-209ENST00000544301 CCDC42Q96M95 316 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 COL4A3BPQ9Y5P4 624 aa19.98■□□□□ 0.79
VIM-209ENST00000544301 PLEKP08567 350 aaPredicted RBP19.97■□□□□ 0.79
VIM-209ENST00000544301 SLC12A3P55017 1021 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 CYP27A1Q02318 531 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 TRAF5O00463 557 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 ENC1O14682 589 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 ZNF263O14978 683 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 TBX3O15119 743 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 FOSP01100 380 aaPredicted RBP19.97■□□□□ 0.79
VIM-209ENST00000544301 ATP1A1P05023 1023 aaKnown RBP19.97■□□□□ 0.79
VIM-209ENST00000544301 ERCC3P19447 782 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 SREBF1P36956 1147 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 CACNB1Q02641 598 aaPredicted RBP19.97■□□□□ 0.79
VIM-209ENST00000544301 ARSHQ5FYA8 562 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 HERC4Q5GLZ8 1057 aaPredicted RBP19.97■□□□□ 0.79
VIM-209ENST00000544301 NCAPH2Q6IBW4 605 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 BTNL9Q6UXG8 535 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 LENG9Q96B70 501 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 PURBQ96QR8 312 aaKnown RBP19.97■□□□□ 0.79
VIM-209ENST00000544301 PNKPQ96T60 521 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 ARHGAP20Q9P2F6 1191 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 HDAC6Q9UBN7 1215 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms