RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 TTLL4Q14679 1199 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 ZNF827Q17R98 1081 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 C6orf163Q5TEZ5 329 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 PEX26Q7Z412 305 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 U2AF1L4Q8WU68 220 aaKnown RBP7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 CEP95Q96GE4 821 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 POM121Q96HA1 1249 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 NT5C1BQ96P26 610 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 TRERF1Q96PN7 1200 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 PPP1R16BQ96T49 567 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 NSRP1Q9H0G5 558 aaKnown RBP7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 ELP3Q9H9T3 547 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 UBAP1Q9NZ09 502 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 ASIC3Q9UHC3 531 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 ZKSCAN5Q9Y2L8 839 aa7.54□□□□□ -1.2
SRGAP1-206ENST00000543397 NRKQ7Z2Y5 1582 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L15C9J2P7 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L13C9JLJ4 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L11C9JVI0 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L18D6R9N7 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L22D6RA61 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L17D6RBQ6 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L19D6RCP7 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L20D6RJB6 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 MEIS1O00470 390 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 STAM2O75886 525 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 STAT3P40763 770 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 HMGCS2P54868 508 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 RNASE9P60153 205 aaKnown RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 TFAMQ00059 246 aaKnown RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP17L24Q0WX57 530 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 NR5A1Q13285 461 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ITPK1Q13572 414 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 SLC39A14Q15043 492 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 HADHQ16836 314 aaKnown RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 GEN1Q17RS7 908 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 TYW1BQ6NUM6 668 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ZNF34Q8IZ26 560 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 RBM46Q8TBY0 533 aaKnown RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PI4K2BQ8TCG2 481 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 CCDC94Q9BW85 323 aaPredicted RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 SNX25Q9H3E2 840 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 TMEM206Q9H813 350 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 TECPR2O15040 1411 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PTPRUQ92729 1446 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 UBN2Q6ZU65 1347 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ABCC12Q96J65 1359 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 TUBBP07437 444 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 SRGAP2CP0DJJ0 459 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ABCB4P21439 1286 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 NR2F2P24468 414 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ELF1P32519 619 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 BPIFB4P59827 614 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 STYK1Q6J9G0 422 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PDZD4Q76G19 769 aaPredicted RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PNMA8AQ86V59 439 aaPredicted RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 TMEM106CQ9BVX2 250 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ACAD9Q9H845 621 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 GGA3Q9NZ52 723 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 KCNH4Q9UQ05 1017 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 CLIC4Q9Y696 253 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 LAMC1P11047 1609 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 CEP104O60308 925 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 JAK3P52333 1124 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PTK2Q05397 1052 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PPP2R3AQ06190 1150 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 NEDD9Q14511 834 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 KRT81Q14533 505 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 LMBRD2Q68DH5 695 aaPredicted RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 MMP19Q99542 508 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 NAPGQ99747 312 aaPredicted RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 IFIH1Q9BYX4 1025 aaKnown RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 RIMS1Q86UR5 1692 aaKnown RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 CEP170BQ9Y4F5 1589 aaPredicted RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 GIPC1O14908 333 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 RNF8O76064 485 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ARPP19P56211 112 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ZBTB16Q05516 673 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PSMD2Q13200 908 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ANGEL2Q5VTE6 544 aaKnown RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 CASC4Q6P4E1 433 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PPM1EQ8WY54 764 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP6NLQ92738 828 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 FAM149B1Q96BN6 582 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 MTFR1LQ9H019 292 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 PARVGQ9HBI0 331 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 TRIM17Q9Y577 477 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 ABCB11O95342 1321 aa7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 USP42Q9H9J4 1324 aaKnown RBP7.53□□□□□ -1.2
SRGAP1-206ENST00000543397 K7ERI5 159 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 ARHGAP6O43182 974 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 RHOXF2BP0C7M4 288 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 KIF11P52732 1056 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 HUNKP57058 714 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 SIRT2Q8IXJ6 389 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 MAIP1Q8WWC4 291 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 TCP11Q8WWU5 503 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 RHOXF2Q9BQY4 288 aa7.52□□□□□ -1.2
SRGAP1-206ENST00000543397 PPP6R2O75170 966 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms