RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 GOLGA8KD6RF30 607 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 SH2B2O14492 632 aaPredicted RBP11.59□□□□□ -0.55
CHFR-219ENST00000541341 FOXP2O15409 715 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 MFAP3LO75121 409 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 MMP1P03956 469 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 CALM1P0DP23 149 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 CALM2P0DP24 149 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 CALM3P0DP25 149 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 CAP2P40123 477 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 TRAPPC10P48553 1259 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 PPFIA1Q13136 1202 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 STIM1Q13586 685 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 CASP8Q14790 479 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 ZYXQ15942 572 aaKnown RBP11.59□□□□□ -0.55
CHFR-219ENST00000541341 LONRF3Q496Y0 759 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 ZNF569Q5MCW4 686 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 APOA5Q6Q788 366 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 AMOTL1Q8IY63 956 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 PXYLP1Q8TE99 480 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 TGFBRAP1Q8WUH2 860 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 CCDC47Q96A33 483 aaKnown RBP11.59□□□□□ -0.55
CHFR-219ENST00000541341 WDR24Q96S15 920 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 CEP89Q96ST8 783 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 ARMT1Q9H993 441 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 ATP8A2Q9NTI2 1148 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 LIMA1Q9UHB6 759 aaKnown RBP11.59□□□□□ -0.55
CHFR-219ENST00000541341 SLC45A1Q9Y2W3 748 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 SYNRGQ9UMZ2 1314 aa11.59□□□□□ -0.55
CHFR-219ENST00000541341 COL11A1P12107 1806 aaPredicted RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 A0A1W2PQC6 194 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 SRRM3A6NNA2 597 aaPredicted RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 USP17L5A8MUK1 530 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 PATL2C9JE40 543 aaKnown RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 TULP1O00294 542 aaPredicted RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 EBAG9O00559 213 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 SASH3O75995 380 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 MARCKSP29966 332 aaPredicted RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 CYLC1P35663 651 aaPredicted RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 IRF5Q13568 498 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 MCM6Q14566 821 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 FAM110CQ1W6H9 321 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 SWT1Q5T5J6 900 aaKnown RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 FAM114A1Q8IWE2 563 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 CCDC170Q8IYT3 715 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 PROCA1Q8NCQ7 364 aaPredicted RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.58□□□□□ -0.565e-6■■■■□ 19.4
CHFR-219ENST00000541341 CRNKL1Q9BZJ0 848 aaKnown RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 PDE11AQ9HCR9 933 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 PAK6Q9NQU5 681 aaPredicted RBP11.58□□□□□ -0.56
CHFR-219ENST00000541341 RNF14Q9UBS8 474 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 RWDD2AQ9UIY3 292 aa11.58□□□□□ -0.56
CHFR-219ENST00000541341 GSG1L2A8MUP6 293 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 TBC1D12O60347 775 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 SEC31AO94979 1220 aaKnown RBP11.57□□□□□ -0.56
CHFR-219ENST00000541341 PRLRP16471 622 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 PBX1P40424 430 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 FOSBP53539 338 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 CDKAL1Q5VV42 579 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 ALS2CLQ60I27 953 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 NECAB2Q7Z6G3 386 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 C10orf67Q8IYJ2 551 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 CRACR2BQ8N4Y2 399 aaPredicted RBP11.57□□□□□ -0.56
CHFR-219ENST00000541341 TRIB2Q92519 343 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 P2RX7Q99572 595 aaKnown RBP11.57□□□□□ -0.56
CHFR-219ENST00000541341 PAGR1Q9BTK6 254 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 PRO3102Q9H379 93 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 DNAJC18Q9H819 358 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 ANKZF1Q9H8Y5 726 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 MAGEF1Q9HAY2 307 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 TXNRD2Q9NNW7 524 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 DCP1AQ9NPI6 582 aaPredicted RBP11.57□□□□□ -0.56
CHFR-219ENST00000541341 RBM28Q9NW13 759 aaKnown RBP11.57□□□□□ -0.56
CHFR-219ENST00000541341 ADD3Q9UEY8 706 aaKnown RBP11.57□□□□□ -0.56
CHFR-219ENST00000541341 SLC4A4Q9Y6R1 1079 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 FLT1P17948 1338 aa11.57□□□□□ -0.56
CHFR-219ENST00000541341 HMGCRP04035 888 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 GUCY2CP25092 1073 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 EEF1GP26641 437 aaKnown RBP11.56□□□□□ -0.56
CHFR-219ENST00000541341 USP14P54578 494 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 ADKP55263 362 aaKnown RBP11.56□□□□□ -0.56
CHFR-219ENST00000541341 SBK1Q52WX2 424 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 GLE1Q53GS7 698 aaKnown RBP11.56□□□□□ -0.56
CHFR-219ENST00000541341 TMEM67Q5HYA8 995 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 MMS22LQ6ZRQ5 1243 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 TOGARAM2Q6ZUX3 1019 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 IFNL3Q8IZI9 196 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 OR8K1Q8NGG5 319 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 FAM76AQ8TAV0 307 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 RNF26Q9BY78 433 aaPredicted RBP11.56□□□□□ -0.56
CHFR-219ENST00000541341 CRISPLD2Q9H0B8 497 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 AS3MTQ9HBK9 375 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 EPB41L4AQ9HCS5 686 aaPredicted RBP11.56□□□□□ -0.56
CHFR-219ENST00000541341 HMX1Q9NP08 348 aaPredicted RBP11.56□□□□□ -0.56
CHFR-219ENST00000541341 LUC7LQ9NQ29 371 aaKnown RBP11.56□□□□□ -0.56
CHFR-219ENST00000541341 ST7Q9NRC1 585 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 TMOD4Q9NZQ9 345 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 GGA2Q9UJY4 613 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 FBXO2Q9UK22 296 aaPredicted RBP11.56□□□□□ -0.56
CHFR-219ENST00000541341 GJD2Q9UKL4 321 aa11.56□□□□□ -0.56
CHFR-219ENST00000541341 JRKLQ9Y4A0 524 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms