RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 FRMD4BQ9Y2L6 1034 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 POTEB3A0JP26 581 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 POTECB2RU33 542 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 COASYQ13057 564 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 ASIC2Q16515 512 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 FBXO38Q6PIJ6 1188 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 POTEBQ6S5H4 581 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 MIGA2Q7L4E1 593 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 PROM2Q8N271 834 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 NHEJ1Q9H9Q4 299 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-213ENST00000540338 SMAP1Q8IYB5 467 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-213ENST00000540338 ZNF710Q8N1W2 664 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 TBC1D5Q92609 795 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 HSD3B7Q9H2F3 369 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 ZBTB21Q9ULJ3 1066 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 MYH14Q7Z406 1995 aaKnown RBP11.9□□□□□ -0.5
CLIP1-213ENST00000540338 DDTLA6NHG4 134 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-213ENST00000540338 DDX39AO00148 427 aaKnown RBP11.9□□□□□ -0.5
CLIP1-213ENST00000540338 XRCC5P13010 732 aaKnown RBP11.9□□□□□ -0.5
CLIP1-213ENST00000540338 KLHL30Q0D2K2 578 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 GRB10Q13322 594 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 FAM160B2Q86V87 743 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 TRIM58Q8NG06 486 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 SHISA4Q96DD7 197 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 L2HGDHQ9H9P8 463 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 FAM184BQ9ULE4 1060 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 NR2F2P24468 414 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 PLS1Q14651 629 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 GJA3Q9Y6H8 435 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 LAMA4Q16363 1823 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 POLR2FP61218 127 aaKnown RBP11.9□□□□□ -0.5
CLIP1-213ENST00000540338 EN1Q05925 392 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-213ENST00000540338 FAM83BQ5T0W9 1011 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 KRT26Q7Z3Y9 468 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 NOX5Q96PH1 765 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 METTL14Q9HCE5 456 aaKnown RBP11.9□□□□□ -0.5
CLIP1-213ENST00000540338 CCPG1Q9ULG6 757 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 PCDHB13Q9Y5F0 798 aa11.9□□□□□ -0.5
CLIP1-213ENST00000540338 LRP5O75197 1615 aa11.9□□□□□ -0.51
CLIP1-213ENST00000540338 CCDC66A2RUB6 948 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 UBXN2AP68543 259 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 BRD3Q15059 726 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 TTI2Q6NXR4 508 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 SMCR8Q8TEV9 937 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-213ENST00000540338 TEKT3Q9BXF9 490 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 IRX2Q9BZI1 471 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-213ENST00000540338 LRRC10BA6NIK2 292 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 TMCO5BA8MYB1 307 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 ZBED4O75132 1171 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 STAT3P40763 770 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 FAM193AP78312 1265 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 GABPAQ06546 454 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 MRIQ9BWK5 157 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 KCNQ5Q9NR82 932 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 HOMER2Q9NSB8 354 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 ZBTB22O15209 634 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 ALAS1P13196 640 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 NAALADL2Q58DX5 795 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 DACT2Q5SW24 774 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 HDXQ7Z353 690 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 MCF2L2Q86YR7 1114 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 RPGRIP1Q96KN7 1286 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 CHP1Q99653 195 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 IDI2Q9BXS1 227 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 WDR11Q9BZH6 1224 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 BHMT2Q9H2M3 363 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 ZNF277Q9NRM2 450 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-213ENST00000540338 ASNSP08243 561 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 SLC15A2Q16348 729 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 PPP4R3CPQ6ZMV5 832 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 MIER3Q7Z3K6 550 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 ZFPM1Q8IX07 1006 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 CEP63Q96MT8 703 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 ZNF577Q9BSK1 485 aa11.89□□□□□ -0.51
CLIP1-213ENST00000540338 POTEFA5A3E0 1075 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 POTEIP0CG38 1075 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 GAP43P17677 238 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 CYP27A1Q02318 531 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 POTEGQ6S5H5 508 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 POTEEQ6S8J3 1075 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 GJA10Q969M2 543 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 PRMT6Q96LA8 375 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-213ENST00000540338 LTBP4Q8N2S1 1624 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 MYCLP12524 364 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-213ENST00000540338 USP8P40818 1118 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 CLCN6P51797 869 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 FKBP1AP62942 108 aaKnown RBP11.88□□□□□ -0.51
CLIP1-213ENST00000540338 NSMFQ6X4W1 530 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 FAM178BQ8IXR5 827 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 MYH2Q9UKX2 1941 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 NWD2Q9ULI1 1742 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 ENC1O14682 589 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 TBX3O15119 743 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 RSBN1LQ6PCB5 846 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-213ENST00000540338 UBE2Q2Q8WVN8 375 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 PICK1Q9NRD5 415 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 MRFAP1Q9Y605 127 aa11.88□□□□□ -0.51
CLIP1-213ENST00000540338 KLRG2A4D1S0 409 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-213ENST00000540338 SLC26A4O43511 780 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 EIF4A3P38919 411 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms