RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PLA2G4AP47712 749 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 PAK1Q13153 545 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 PWP2Q15269 919 aaKnown RBP12.01□□□□□ -0.49
CLIP1-210ENST00000538120 ECM1Q16610 540 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 ARHGEF10LQ9HCE6 1279 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 MYOZ2Q9NPC6 264 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 ADD3Q9UEY8 706 aaKnown RBP12.01□□□□□ -0.49
CLIP1-210ENST00000538120 SEC31AO94979 1220 aaKnown RBP12.01□□□□□ -0.49
CLIP1-210ENST00000538120 EGFRP00533 1210 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 PNMA6AP0CW24 399 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-210ENST00000538120 PBX1P40424 430 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 USP11P51784 963 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 PMS1P54277 932 aaKnown RBP12.01□□□□□ -0.49
CLIP1-210ENST00000538120 SEMA3FQ13275 785 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 DHX8Q14562 1220 aaKnown RBP12.01□□□□□ -0.49
CLIP1-210ENST00000538120 BMS1Q14692 1282 aaKnown RBP12.01□□□□□ -0.49
CLIP1-210ENST00000538120 TMEM266Q2M3C6 531 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 USH1GQ495M9 461 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 REXO1L1PQ8IX06 675 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 CALML4Q96GE6 196 aa12.01□□□□□ -0.49
CLIP1-210ENST00000538120 SCAF8Q9UPN6 1271 aaKnown RBP12.01□□□□□ -0.49
CLIP1-210ENST00000538120 LRRC10BA6NIK2 292 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 URI1O94763 535 aaPredicted RBP12□□□□□ -0.49
CLIP1-210ENST00000538120 POLD1P28340 1107 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 CAP2P40123 477 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 KCNJ6P48051 423 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 PRELPP51888 382 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 ZNF280AP59817 542 aaPredicted RBP12□□□□□ -0.49
CLIP1-210ENST00000538120 IKQ13123 557 aaPredicted RBP12□□□□□ -0.49
CLIP1-210ENST00000538120 AP3B2Q13367 1082 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 TMEM119Q4V9L6 283 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 FAM83BQ5T0W9 1011 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 SPECC1LQ69YQ0 1117 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 KCNK18Q7Z418 384 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 TMEM139Q8IV31 216 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 ZC3H15Q8WU90 426 aaKnown RBP12□□□□□ -0.49
CLIP1-210ENST00000538120 KCNMB3Q9NPA1 279 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 LIMA1Q9UHB6 759 aaKnown RBP12□□□□□ -0.49
CLIP1-210ENST00000538120 MYMKA6NI61 221 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 MCM6Q14566 821 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 FER1L6Q2WGJ9 1857 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 IRF2BP1Q8IU81 584 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 NAP1L4Q99733 375 aaKnown RBP12□□□□□ -0.49
CLIP1-210ENST00000538120 CARD6Q9BX69 1037 aa12□□□□□ -0.49
CLIP1-210ENST00000538120 GLIS2Q9BZE0 524 aaPredicted RBP12□□□□□ -0.49
CLIP1-210ENST00000538120 MYH7BA7E2Y1 1941 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 TRIM49BA6NDI0 452 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 KRT31Q15323 416 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 TC2NQ8N9U0 490 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 SNX29Q8TEQ0 813 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 JDP2Q8WYK2 163 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 UBXN4Q92575 508 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 TEPSINQ96N21 525 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 STK17AQ9UEE5 414 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 PHF20L1A8MW92 1017 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 ZRANB2O95218 330 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLIP1-210ENST00000538120 HOXB3P14651 431 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-210ENST00000538120 STAT2P52630 851 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 ARHGAP4P98171 946 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 STK4Q13043 487 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 KRT79Q5XKE5 535 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 MOXD1Q6UVY6 613 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 SV2BQ7L1I2 683 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 CCDC84Q86UT8 332 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-210ENST00000538120 RAD54LQ92698 747 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 UIMC1Q96RL1 719 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 RAB34Q9BZG1 259 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 VCPKMTQ9H867 229 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 GOPCQ9HD26 462 aa11.99□□□□□ -0.49
CLIP1-210ENST00000538120 BRCA1P38398 1863 aaKnown RBP11.99□□□□□ -0.49
CLIP1-210ENST00000538120 H7C1D1 291 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 FCER1AP12319 257 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 ASIC1P78348 528 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 AMPD3Q01432 767 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 PDE4DQ08499 809 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 RASA3Q14644 834 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 TNIP1Q15025 636 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 TCP11X2Q5H9J9 407 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 HYIQ5T013 277 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 TAF3Q5VWG9 929 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 TTI2Q6NXR4 508 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 GPATCH11Q8N954 259 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 LARP4BQ92615 738 aaKnown RBP11.98□□□□□ -0.49
CLIP1-210ENST00000538120 LENG9Q96B70 501 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 PPP1R1BQ9UD71 204 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-210ENST00000538120 PCDHA12Q9UN75 941 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 PHLPP2Q6ZVD8 1323 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 POLR3GO15318 223 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-210ENST00000538120 NRDCO43847 1150 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 TADA3O75528 432 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 HOXA13P31271 388 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-210ENST00000538120 SREBF1P36956 1147 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 ADKP55263 362 aaKnown RBP11.98□□□□□ -0.49
CLIP1-210ENST00000538120 IRF5Q13568 498 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 Q4G0T1 1027 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 MCTP2Q6DN12 878 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 MNS1Q8NEH6 495 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 ETNPPLQ8TBG4 499 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 TBC1D5Q92609 795 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 HPS3Q969F9 1004 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms