RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 KIFAP3Q92845 792 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 USP44Q9H0E7 712 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 RANBP17Q9H2T7 1088 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 DMAP1Q9NPF5 467 aaPredicted RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 PANK4Q9NVE7 773 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 PAIP2BQ9ULR5 123 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 PDHA1P08559 390 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 FECHP22830 423 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 GUCY2FP51841 1108 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 SPA17Q15506 151 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 SPATA4Q8NEY3 305 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 KLHL29Q96CT2 875 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 SUCLG2Q96I99 432 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 DMGDHQ9UI17 866 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 HYOU1Q9Y4L1 999 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 GLI3P10071 1580 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 MROH7-TTC4A0A0A0MT08 1334 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 E2F6O75461 281 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 TMCC1O94876 653 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 GYPCP04921 128 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 MYBL1P10243 752 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 ELOA2Q8IYF1 753 aaPredicted RBP11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 RAB3IPQ96QF0 476 aaPredicted RBP11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 IWS1Q96ST2 819 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 TMBIM4Q9HC24 238 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.9□□□□□ -0.58e-6■■■□□ 14.7
CLSTN3-207ENST00000537408 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.9□□□□□ -0.59e-11■■□□□ 12.7
CLSTN3-207ENST00000537408 STK38LQ9Y2H1 464 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 PHRF1Q9P1Y6 1649 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 FXR1P51114 621 aaKnown RBP eCLIP11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 GSTO1P78417 241 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 MAP3K12Q12852 859 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 RASA3Q14644 834 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 DLGAP5Q15398 846 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 SEPT14Q6ZU15 432 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 IQCKQ8N0W5 287 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 KLHDC4Q8TBB5 520 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 NCOA5Q9HCD5 579 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 ZNF185O15231 689 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 IARSP41252 1262 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 TNFAIP1Q13829 316 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 MYBPC3Q14896 1274 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 QPCTQ16769 361 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 RESP18Q5W5W9 173 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 MREGQ8N565 214 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 KCNV2Q8TDN2 545 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 RAPGEF5Q92565 580 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 GALNT8Q9NY28 637 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 ADD3Q9UEY8 706 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 NFU1Q9UMS0 254 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 HPSEQ9Y251 543 aa11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 LUC7L2Q9Y383 392 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-207ENST00000537408 TOPAZ1Q8N9V7 1692 aa11.9□□□□□ -0.51
CLSTN3-207ENST00000537408 NEURL1BA8MQ27 555 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 ORC4O43929 436 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 ZFXP17010 805 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF131P52739 623 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 CUL4BQ13620 913 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 HLTFQ14527 1009 aaKnown RBP eCLIP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 SPRED3Q2MJR0 410 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 RAB11FIP4Q86YS3 637 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF274Q96GC6 653 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 TRIM10Q9UDY6 481 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 PHF24Q9UPV7 400 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 AKAP12Q02952 1782 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 MACROD2A1Z1Q3 448 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 E7ENQ6 273 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 BAG3O95817 575 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 ABL1P00519 1130 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 UQCRFS1P1P0C7P4 283 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 HIBADHP31937 336 aaKnown RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 PSMC4P43686 418 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 SLC9C2Q5TAH2 1124 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 CRACR2BQ8N4Y2 399 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 PHACTR1Q9C0D0 580 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 SENP2Q9HC62 589 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF277Q9NRM2 450 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 CTTNBP2NLQ9P2B4 639 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 HACL1Q9UJ83 578 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 SLC12A4Q9UP95 1085 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 MAP2P11137 1827 aaKnown RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 CETN3O15182 167 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 GNAQP50148 359 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 MTMR3Q13615 1198 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 OTUD7BQ6GQQ9 843 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 CCDC80Q76M96 950 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 ERICH1Q86X53 443 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 HELBQ8NG08 1087 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 GPR75-ASB3A0A0A6YYF3 556 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 PHF20L1A8MW92 1017 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 NBPF26B4DH59 902 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 CTDNEP1O95476 244 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 PENKP01210 267 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 FAM200BP0CF97 657 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 ALADP13716 330 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 CDC37Q16543 378 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 BEND3Q5T5X7 828 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 IQCDQ96DY2 449 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 SNX12Q9UMY4 172 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 MTMR7Q9Y216 660 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms