RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 UBA1P22314 1058 aaKnown RBP16.09■□□□□ 0.17
SYNE1-235ENST00000537033 ANTXR2P58335 489 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 SLC35G1Q2M3R5 365 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 MYSM1Q5VVJ2 828 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 NFXL1Q6ZNB6 911 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 IL31RAQ8NI17 732 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 IGDCC4Q8TDY8 1250 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 PIBF1Q8WXW3 757 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 MAP3K14Q99558 947 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 LZTS2Q9BRK4 669 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 MTA3Q9BTC8 594 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 SPZ1Q9BXG8 430 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 CCDC69A6NI79 296 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 NOP56O00567 594 aaKnown RBP16.08■□□□□ 0.16
SYNE1-235ENST00000537033 PRC1O43663 620 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 SORBS3O60504 671 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 RGS20O76081 388 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 CA3P07451 260 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 HOXD8P13378 290 aaPredicted RBP16.08■□□□□ 0.16
SYNE1-235ENST00000537033 MCM5P33992 734 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 GNAQP50148 359 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 RBL2Q08999 1139 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 PTK7Q13308 1070 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 TJAP1Q5JTD0 557 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 TMTC2Q8N394 836 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 SMARCC2Q8TAQ2 1214 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 TSPYL2Q9H2G4 693 aaPredicted RBP16.08■□□□□ 0.16
SYNE1-235ENST00000537033 LY9Q9HBG7 655 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 THEGQ9P2T0 379 aa16.08■□□□□ 0.16
SYNE1-235ENST00000537033 HAS3O00219 553 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 CKBP12277 381 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 ADGRE1Q14246 886 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 CCDC85BQ15834 202 aaPredicted RBP16.07■□□□□ 0.16
SYNE1-235ENST00000537033 HSDL1Q3SXM5 330 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 HERC6Q8IVU3 1022 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 TMEM87BQ96K49 555 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 CTAGE1Q96RT6 745 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 MYL10Q9BUA6 226 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 TET1Q8NFU7 2136 aa16.07■□□□□ 0.16
SYNE1-235ENST00000537033 PRUNE2Q8WUY3 3088 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 FRMPD4Q14CM0 1322 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 GTPBP6O43824 516 aaPredicted RBP16.06■□□□□ 0.16
SYNE1-235ENST00000537033 CALM1P0DP23 149 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 CALM2P0DP24 149 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 CALM3P0DP25 149 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 SMARCA1P28370 1054 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 SP2Q02086 613 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 NEDD9Q14511 834 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 CNKSR3Q6P9H4 555 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 MICALL1Q8N3F8 863 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 IL27Q8NEV9 243 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 ATXN2LQ8WWM7 1075 aaKnown RBP16.06■□□□□ 0.16
SYNE1-235ENST00000537033 DHX38Q92620 1227 aaKnown RBP16.06■□□□□ 0.16
SYNE1-235ENST00000537033 ZFP91Q96JP5 570 aaPredicted RBP16.06■□□□□ 0.16
SYNE1-235ENST00000537033 CHD9Q3L8U1 2897 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 PTPRSQ13332 1948 aa16.06■□□□□ 0.16
SYNE1-235ENST00000537033 DOCK5Q9H7D0 1870 aa16.05■□□□□ 0.16
SYNE1-235ENST00000537033 EMSYQ7Z589 1322 aa16.05■□□□□ 0.16
SYNE1-235ENST00000537033 SH2B2O14492 632 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-235ENST00000537033 FIBPO43427 364 aa16.05■□□□□ 0.16
SYNE1-235ENST00000537033 TLL1O43897 1013 aa16.05■□□□□ 0.16
SYNE1-235ENST00000537033 EFCAB14O75071 495 aa16.05■□□□□ 0.16
SYNE1-235ENST00000537033 INPP4AQ96PE3 977 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-235ENST00000537033 ESYT1Q9BSJ8 1104 aa16.05■□□□□ 0.16
SYNE1-235ENST00000537033 ZBED2Q9BTP6 218 aa16.05■□□□□ 0.16
SYNE1-235ENST00000537033 LSG1Q9H089 658 aaKnown RBP16.05■□□□□ 0.16
SYNE1-235ENST00000537033 ANO2Q9NQ90 1003 aa16.05■□□□□ 0.16
SYNE1-235ENST00000537033 ABHD14A-ACY1A0A1B0GW23 586 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 C17orf102A2RUQ5 167 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 H3BRB1 525 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 SLC27A2O14975 620 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 CXCL10P02778 98 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 LGALS2P05162 132 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 ICAM3P32942 547 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 WDR5P61964 334 aaKnown RBP16.04■□□□□ 0.16
SYNE1-235ENST00000537033 MRPS9P82933 396 aaKnown RBP16.04■□□□□ 0.16
SYNE1-235ENST00000537033 RNF20Q5VTR2 975 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 PCNX4Q63HM2 1172 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 XRRA1Q6P2D8 792 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 METTL7BQ6UX53 244 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 GPKOWQ92917 476 aaPredicted RBP eCLIP16.04■□□□□ 0.16
SYNE1-235ENST00000537033 C16orf70Q9BSU1 422 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 USP26Q9BXU7 913 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 TUT1Q9H6E5 874 aaKnown RBP16.04■□□□□ 0.16
SYNE1-235ENST00000537033 PRDM6Q9NQX0 595 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 ZNF215Q9UL58 517 aaPredicted RBP16.04■□□□□ 0.16
SYNE1-235ENST00000537033 SLC12A7Q9Y666 1083 aa16.04■□□□□ 0.16
SYNE1-235ENST00000537033 COL4A4P53420 1690 aaPredicted RBP16.03■□□□□ 0.16
SYNE1-235ENST00000537033 SPATA31C2B4DYI2 1134 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 PIK3CDO00329 1044 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 NBNO60934 754 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 PLEKHA8P1O95397 391 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 THPOP40225 353 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 LIFRP42702 1097 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 MRPS5P82675 430 aaKnown RBP16.03■□□□□ 0.16
SYNE1-235ENST00000537033 TAP1Q03518 808 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 IKBKEQ14164 716 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 ZNF618Q5T7W0 954 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 CREB3L3Q68CJ9 461 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 USP17L6PQ6QN14 398 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms