RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PCDHB12Q9Y5F1 795 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 NCOA3Q9Y6Q9 1424 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 BRD4O60885 1362 aaPredicted RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 ABCA5Q8WWZ7 1642 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 TMEM265A0A087WTH1 108 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 SHTN1A0MZ66 631 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 CCDC85CA6NKD9 419 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 F8VZ95 297 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 ZSCAN9O15535 394 aaPredicted RBP6.3□□□□□ -1.4
CD44-236ENST00000533222 ZBED4O75132 1171 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 MSL3P1P0C860 447 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 CD247P20963 164 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 G3BP1Q13283 466 aaKnown RBP eCLIP6.3□□□□□ -1.4
CD44-236ENST00000533222 NEDD9Q14511 834 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 FXNQ16595 210 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 IQCEQ6IPM2 695 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 KIAA1328Q86T90 577 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 SPATS2Q86XZ4 545 aaKnown RBP6.3□□□□□ -1.4
CD44-236ENST00000533222 ERC1Q8IUD2 1116 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 APLFQ8IW19 511 aaPredicted RBP6.3□□□□□ -1.4
CD44-236ENST00000533222 ZNF483Q8TF39 744 aaPredicted RBP6.3□□□□□ -1.4
CD44-236ENST00000533222 UBXN4Q92575 508 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 JAKMIP2Q96AA8 810 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 ZBTB10Q96DT7 871 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 DTNBP1Q96EV8 351 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 SCYL1Q96KG9 808 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 HRASLS5Q96KN8 279 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 MPHOSPH6Q99547 160 aaKnown RBP6.3□□□□□ -1.4
CD44-236ENST00000533222 GPR62Q9BZJ7 368 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 BATF3Q9NR55 127 aa6.3□□□□□ -1.4
CD44-236ENST00000533222 SOS1Q07889 1333 aaPredicted RBP6.29□□□□□ -1.4
CD44-236ENST00000533222 KIF2AO00139 706 aaPredicted RBP6.29□□□□□ -1.4
CD44-236ENST00000533222 CD8BP10966 210 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 TPP2P29144 1249 aaPredicted RBP6.29□□□□□ -1.4
CD44-236ENST00000533222 CTSKP43235 329 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 RBM5P52756 815 aaKnown RBP eCLIP6.29□□□□□ -1.4
CD44-236ENST00000533222 EIF2B5Q13144 721 aaKnown RBP6.29□□□□□ -1.4
CD44-236ENST00000533222 BBS9Q3SYG4 887 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 PARP10Q53GL7 1025 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 CENPQQ7L2Z9 268 aaPredicted RBP6.29□□□□□ -1.4
CD44-236ENST00000533222 VPS37AQ8NEZ2 397 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 ZNF397Q8NF99 534 aaPredicted RBP6.29□□□□□ -1.4
CD44-236ENST00000533222 SMARCC1Q92922 1105 aaPredicted RBP6.29□□□□□ -1.4
CD44-236ENST00000533222 LNPKQ9C0E8 428 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 IFT122Q9HBG6 1241 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 PCMTD2Q9NV79 361 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 HOXC10Q9NYD6 342 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 TMOD4Q9NZQ9 345 aa6.29□□□□□ -1.4
CD44-236ENST00000533222 SCO2A0A1W2PP80 73 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 CFAP69A5D8W1 941 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 H0Y8X5 98 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 SIGLEC6O43699 453 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 HYAL3O43820 417 aaPredicted RBP6.28□□□□□ -1.4
CD44-236ENST00000533222 SUSD5O60279 629 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 ESR1P03372 595 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 PRNPP04156 253 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 BDNFP23560 247 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 U2AF2P26368 475 aaKnown RBP eCLIP6.28□□□□□ -1.4
CD44-236ENST00000533222 SLC8A3P57103 927 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 PRKCQQ04759 706 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 CCDC15Q0P6D6 951 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 LRP8Q14114 963 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 NCAPHQ15003 741 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 CLEC16AQ2KHT3 1053 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 KLHL40Q2TBA0 621 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 GAB4Q2WGN9 574 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 SLC4A8Q2Y0W8 1093 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 C4orf46Q504U0 113 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 HEATR6Q6AI08 1181 aaKnown RBP6.28□□□□□ -1.4
CD44-236ENST00000533222 CRTC3Q6UUV7 619 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 RSPH3Q86UC2 560 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 TSPYL5Q86VY4 417 aaPredicted RBP6.28□□□□□ -1.4
CD44-236ENST00000533222 LZICQ8WZA0 190 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 PPP1R14BQ96C90 147 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 EVI5LQ96CN4 794 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 DHTKD1Q96HY7 919 aaPredicted RBP6.28□□□□□ -1.4
CD44-236ENST00000533222 PANK3Q9H999 370 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 PRDM7Q9NQW5 492 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 CHST7Q9NS84 486 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 TUBA8Q9NY65 449 aaPredicted RBP6.28□□□□□ -1.4
CD44-236ENST00000533222 PNMA2Q9UL42 364 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 MSRB2Q9Y3D2 182 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 SNX11Q9Y5W9 270 aa6.28□□□□□ -1.4
CD44-236ENST00000533222 RPAP1Q9BWH6 1393 aaPredicted RBP6.28□□□□□ -1.4
CD44-236ENST00000533222 BAZ1AQ9NRL2 1556 aaPredicted RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 ERICH3Q5RHP9 1530 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 A0A087WUV0 522 aaPredicted RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 A0A1B0GUA9 196 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 FAM221BA6H8Z2 402 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 OPA1O60313 960 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 KRT38O76015 456 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 HOXD10P28358 340 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 GYS2P54840 703 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 CORO7P57737 925 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 RBM6P78332 1123 aaKnown RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 IKZF1Q13422 519 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 IQCB1Q15051 598 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 PKN1Q16512 942 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 CLPPQ16740 277 aaPredicted RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 SLC10A6Q3KNW5 377 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms