RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SMARCA5O60264 1052 aaPredicted RBP5.56□□□□□ -1.52
CD44-233ENST00000531141 DNAJC8O75937 253 aaPredicted RBP5.56□□□□□ -1.52
CD44-233ENST00000531141 FARP2O94887 1054 aaPredicted RBP5.56□□□□□ -1.52
CD44-233ENST00000531141 NPTXRO95502 500 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 ASLP04424 464 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 SRSF3P84103 164 aaKnown RBP5.56□□□□□ -1.52
CD44-233ENST00000531141 PRR5P85299 388 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 HABP4Q5JVS0 413 aaKnown RBP5.56□□□□□ -1.52
CD44-233ENST00000531141 OTOP3Q7RTS5 596 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 NIM1KQ8IY84 436 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 POU5F2Q8N7G0 328 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 UHMK1Q8TAS1 419 aaKnown RBP5.56□□□□□ -1.52
CD44-233ENST00000531141 ALG3Q92685 438 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 MFSD3Q96ES6 412 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 CLUHP3Q96NS8 147 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 PPP1R16BQ96T49 567 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 CELF4Q9BZC1 486 aaKnown RBP5.56□□□□□ -1.52
CD44-233ENST00000531141 SLKQ9H2G2 1235 aaPredicted RBP5.56□□□□□ -1.52
CD44-233ENST00000531141 RXFP1Q9HBX9 757 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 SLC6A20Q9NP91 592 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 SIRT5Q9NXA8 310 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 SIT1Q9Y3P8 196 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 PCDHB4Q9Y5E5 795 aa5.56□□□□□ -1.52
CD44-233ENST00000531141 SGSM2O43147 1006 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 CLSTN1O94985 981 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 ST5P78524 1137 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 ZNF200P98182 395 aaPredicted RBP5.55□□□□□ -1.52
CD44-233ENST00000531141 MESP2Q0VG99 397 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 PIP4K2CQ8TBX8 421 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 FAM84AQ96KN4 292 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 KCNJ15Q99712 375 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 JAM3Q9BX67 310 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 RNF38Q9H0F5 515 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 MYOTQ9UBF9 498 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 MBD1Q9UIS9 605 aaPredicted RBP5.55□□□□□ -1.52
CD44-233ENST00000531141 PALD1Q9ULE6 856 aa5.55□□□□□ -1.52
CD44-233ENST00000531141 CCDC66A2RUB6 948 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 OPA1O60313 960 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 TADA3O75528 432 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 FBLN1P23142 703 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 GLDCP23378 1020 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 FLT3P36888 993 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 DALRD3Q5D0E6 543 aaKnown RBP5.54□□□□□ -1.52
CD44-233ENST00000531141 FIGNQ5HY92 759 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 OGFOD2Q6N063 350 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 C16orf59Q7L2K0 433 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 DDX53Q86TM3 631 aaKnown RBP5.54□□□□□ -1.52
CD44-233ENST00000531141 AMIGO3Q86WK7 504 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 MIB1Q86YT6 1006 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 BHLHE22Q8NFJ8 381 aaPredicted RBP5.54□□□□□ -1.52
CD44-233ENST00000531141 SLC38A3Q99624 504 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 SMOC1Q9H4F8 434 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 CNTD2Q9H8S5 307 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 HCFC2Q9Y5Z7 792 aa5.54□□□□□ -1.52
CD44-233ENST00000531141 IRS4O14654 1257 aaPredicted RBP5.53□□□□□ -1.52
CD44-233ENST00000531141 CKMP06732 381 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 SRGAP2CP0DJJ0 459 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 MED14OSP0DP75 135 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 PYGMP11217 842 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 PFKLP17858 780 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 PMLP29590 882 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 CDR1P51861 262 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 TARBP2Q15633 366 aaKnown RBP5.53□□□□□ -1.52
CD44-233ENST00000531141 GPR19Q15760 415 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 CRY1Q16526 586 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 TMEM132EQ6IEE7 984 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 ZCCHC8Q6NZY4 707 aaKnown RBP5.53□□□□□ -1.52
CD44-233ENST00000531141 MILR1Q7Z6M3 343 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 FAM126BQ8IXS8 530 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 TTLL11Q8NHH1 800 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 CPA5Q8WXQ8 436 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 TMX1Q9H3N1 280 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 CATSPERZQ9NTU4 200 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 ASH2LQ9UBL3 628 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 DSEQ9UL01 958 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 CBLCQ9ULV8 474 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 SRPK3Q9UPE1 567 aa5.53□□□□□ -1.52
CD44-233ENST00000531141 TNPO3Q9Y5L0 923 aaKnown RBP5.53□□□□□ -1.52
CD44-233ENST00000531141 IRS2Q9Y4H2 1338 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 TCRBV5S2A0A599 114 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 ZNF561-AS1K7EIQ3 104 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 N4BP3O15049 544 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 TSPAN15O95858 294 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 SDSP20132 328 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 DNM2P50570 870 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 DLG4P78352 724 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 ZNF460Q14592 562 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 TM4SF20Q53R12 229 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 TMEM177Q53S58 311 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 EGFLAMQ63HQ2 1017 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 ETV3LQ6ZN32 361 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 SYDE1Q6ZW31 735 aaPredicted RBP5.52□□□□□ -1.53
CD44-233ENST00000531141 LRRTM3Q86VH5 581 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 LDHDQ86WU2 507 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 ANKLE2Q86XL3 938 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 TRIM48Q8IWZ4 208 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 PPM1KQ8N3J5 372 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 CISD2Q8N5K1 135 aaKnown RBP5.52□□□□□ -1.53
CD44-233ENST00000531141 MZB1Q8WU39 189 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 YIPF4Q9BSR8 244 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms