RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MYSM1Q5VVJ2 828 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 HOMER1Q86YM7 354 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 PIGSQ96S52 555 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 ALG1Q9BT22 464 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 SENP2Q9HC62 589 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 TAF6LQ9Y6J9 622 aa13.17□□□□□ -0.3
VPS28-214ENST00000531032 FRMPD4Q14CM0 1322 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 BAZ2BQ9UIF8 2168 aaKnown RBP13.16□□□□□ -0.3
VPS28-214ENST00000531032 ERICH2A1L162 156 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 EPOPA6NHQ4 379 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 GCOM1H8Y6P7 765 aaPredicted RBP13.16□□□□□ -0.3
VPS28-214ENST00000531032 IFIT3O14879 490 aaKnown RBP13.16□□□□□ -0.3
VPS28-214ENST00000531032 NBNO60934 754 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 GGPS1O95749 300 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 POLR2MP0CAP2 368 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 UBA1P22314 1058 aaKnown RBP13.16□□□□□ -0.3
VPS28-214ENST00000531032 CCND2P30279 289 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 KCNJ6P48051 423 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 SP2Q02086 613 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 WTAPQ15007 396 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 TRIM71Q2Q1W2 868 aaKnown RBP13.16□□□□□ -0.3
VPS28-214ENST00000531032 HSDL1Q3SXM5 330 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 CNKSR3Q6P9H4 555 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 TRAF7Q6Q0C0 670 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 RALYLQ86SE5 291 aaKnown RBP13.16□□□□□ -0.3
VPS28-214ENST00000531032 NCOA7Q8NI08 942 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 ADAMTS19Q8TE59 1207 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 SPATA33Q96N06 139 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 TSPYL2Q9H2G4 693 aaPredicted RBP13.16□□□□□ -0.3
VPS28-214ENST00000531032 MTCH2Q9Y6C9 303 aa13.16□□□□□ -0.3
VPS28-214ENST00000531032 PRRC2BQ5JSZ5 2229 aaKnown RBP13.16□□□□□ -0.3
VPS28-214ENST00000531032 COL4A4P53420 1690 aaPredicted RBP13.15□□□□□ -0.3
VPS28-214ENST00000531032 PNMA6FA0A0J9YX94 578 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 E7EWF7 191 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 RFXAPO00287 272 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 SGSM2O43147 1006 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 GTPBP6O43824 516 aaPredicted RBP13.15□□□□□ -0.3
VPS28-214ENST00000531032 TLL1O43897 1013 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 ANTXR2P58335 489 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 SART3Q15020 963 aaKnown RBP13.15□□□□□ -0.3
VPS28-214ENST00000531032 MICALL1Q8N3F8 863 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 WNT8BQ93098 351 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 C16orf70Q9BSU1 422 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 CERS4Q9HA82 394 aa13.15□□□□□ -0.3
VPS28-214ENST00000531032 SUPT16HQ9Y5B9 1047 aaKnown RBP13.15□□□□□ -0.3
VPS28-214ENST00000531032 ABHD14A-ACY1A0A1B0GW23 586 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 HOXC8P31273 242 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 DEFB103AP81534 67 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 ZNF200P98182 395 aaPredicted RBP13.14□□□□□ -0.31
VPS28-214ENST00000531032 HIC1Q14526 733 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 TCTN1Q2MV58 587 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 ZNF618Q5T7W0 954 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 CATIPQ7Z7H3 387 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 FCHSD1Q86WN1 690 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 MB21D2Q8IYB1 491 aaPredicted RBP13.14□□□□□ -0.31
VPS28-214ENST00000531032 IGDCC4Q8TDY8 1250 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 ARNTL2Q8WYA1 636 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 GPKOWQ92917 476 aaPredicted RBP eCLIP13.14□□□□□ -0.31
VPS28-214ENST00000531032 MAP4K1Q92918 833 aa13.14□□□□□ -0.31
VPS28-214ENST00000531032 NCOR1O75376 2440 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 LCHNA4D1U4 455 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 SORBS3O60504 671 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 EFCAB14O75071 495 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 STAM2O75886 525 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 GJB5O95377 273 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 ICAM3P32942 547 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 MRPS9P82933 396 aaKnown RBP13.13□□□□□ -0.31
VPS28-214ENST00000531032 MBTPS1Q14703 1052 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 GNPTABQ3T906 1256 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 SPRED2Q7Z698 418 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 TMCO2Q7Z6W1 182 aaPredicted RBP13.13□□□□□ -0.31
VPS28-214ENST00000531032 SERINC5Q86VE9 423 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 ZFP91Q96JP5 570 aaPredicted RBP13.13□□□□□ -0.31
VPS28-214ENST00000531032 INPP4AQ96PE3 977 aaPredicted RBP13.13□□□□□ -0.31
VPS28-214ENST00000531032 UHRF1Q96T88 793 aaPredicted RBP13.13□□□□□ -0.31
VPS28-214ENST00000531032 MAP3K14Q99558 947 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 MLXIPQ9HAP2 919 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 EMSYQ7Z589 1322 aa13.13□□□□□ -0.31
VPS28-214ENST00000531032 H3BRB1 525 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 LPXNO60711 386 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 DDAH1O94760 285 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 LGALS2P05162 132 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 BMP1P13497 986 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 TFF2Q03403 129 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 SEMA3FQ13275 785 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 GRB10Q13322 594 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 MKRN4PQ13434 485 aaPredicted RBP13.12□□□□□ -0.31
VPS28-214ENST00000531032 IKBKEQ14164 716 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 AAK1Q2M2I8 961 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 KRT40Q6A162 431 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 METTL7BQ6UX53 244 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 IL27Q8NEV9 243 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 MTA3Q9BTC8 594 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 SPZ1Q9BXG8 430 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 TUT1Q9H6E5 874 aaKnown RBP13.12□□□□□ -0.31
VPS28-214ENST00000531032 BCAS3Q9H6U6 928 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 LY9Q9HBG7 655 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 BDP1A6H8Y1 2624 aa13.12□□□□□ -0.31
VPS28-214ENST00000531032 SIP14410 1827 aa13.11□□□□□ -0.31
VPS28-214ENST00000531032 DOCK5Q9H7D0 1870 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms