RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 MYSM1Q5VVJ2 828 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 PCNX4Q63HM2 1172 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 XRRA1Q6P2D8 792 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 BLOC1S2Q6QNY1 142 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 ZNF365Q70YC5 407 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 SESTD1Q86VW0 696 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 CCDC155Q8N6L0 562 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 C7orf31Q8N865 590 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 KAT2BQ92831 832 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 GPKOWQ92917 476 aaPredicted RBP eCLIP15.31■□□□□ 0.04
VPS28-211ENST00000530790 KCNB2Q92953 911 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 SCLYQ96I15 445 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 BRPF3Q9ULD4 1205 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 STXBP5LQ9Y2K9 1186 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 SNX14Q9Y5W7 946 aa15.31■□□□□ 0.04
VPS28-211ENST00000530790 TMEM265A0A087WTH1 108 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 SPDYE3A6NKU9 549 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 PITPNM1O00562 1244 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 NOP56O00567 594 aaKnown RBP15.3■□□□□ 0.04
VPS28-211ENST00000530790 FGBP02675 491 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 PFKMP08237 780 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 HOXD8P13378 290 aaPredicted RBP15.3■□□□□ 0.04
VPS28-211ENST00000530790 DNAJB2P25686 324 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 ICAM3P32942 547 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 PSEN2P49810 448 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 SP2Q02086 613 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 PTGISQ16647 500 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 UBE2SQ16763 222 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 KIAA0753Q2KHM9 967 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 HSDL1Q3SXM5 330 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 RASIP1Q5U651 963 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 PPP1R18Q6NYC8 613 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 RPUSD2Q8IZ73 545 aaKnown RBP15.3■□□□□ 0.04
VPS28-211ENST00000530790 HERVK_113Q902F9 699 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 ALG1Q9BT22 464 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 RTEL1Q9NZ71 1219 aa15.3■□□□□ 0.04
VPS28-211ENST00000530790 TANC1Q9C0D5 1861 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 hCG_1984214I3L0E3 225 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 PPFIA4O75335 1185 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 CPA1P15085 419 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 RFC2P35250 354 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 METAP2P50579 478 aaKnown RBP eCLIP15.29■□□□□ 0.04
VPS28-211ENST00000530790 NAPAP54920 295 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 NEDD9Q14511 834 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 WWC2Q6AWC2 1192 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 GDF6Q6KF10 455 aaPredicted RBP15.29■□□□□ 0.04
VPS28-211ENST00000530790 METTL7BQ6UX53 244 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 Q6ZUG5 572 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 ZNF713Q8N859 430 aaPredicted RBP15.29■□□□□ 0.04
VPS28-211ENST00000530790 RETREG2Q8NC44 543 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 CAGE1Q8TC20 777 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 GUCD1Q96NT3 240 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 EHMT1Q9H9B1 1298 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 GTF2IRD1Q9UHL9 959 aa15.29■□□□□ 0.04
VPS28-211ENST00000530790 CCDC196A0A1B0GTZ2 297 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 SPATA31C2B4DYI2 1134 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 PSMA5P28066 241 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 APOBRQ0VD83 1088 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 FUT2Q10981 343 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 OTOP2Q7RTS6 562 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 NLRX1Q86UT6 975 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 BRF1Q92994 677 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 PPP4R2Q9NY27 417 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 HDAC6Q9UBN7 1215 aa15.28■□□□□ 0.04
VPS28-211ENST00000530790 ZBBXA8MT70 800 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 HAS3O00219 553 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 EPB41L2O43491 1005 aaKnown RBP15.27■□□□□ 0.04
VPS28-211ENST00000530790 RPS6KB1P23443 525 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 ADCY7P51828 1080 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 SEMA3FQ13275 785 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 CYFIP1Q7L576 1253 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 DEFB128Q7Z7B8 93 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 TEX2Q8IWB9 1127 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 GPRASP2Q96D09 838 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 CDHR1Q96JP9 859 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 TTYH1Q9H313 450 aaPredicted RBP15.27■□□□□ 0.04
VPS28-211ENST00000530790 SEMA6BQ9H3T3 888 aa15.27■□□□□ 0.04
VPS28-211ENST00000530790 CXXC1Q9P0U4 656 aaPredicted RBP15.27■□□□□ 0.04
VPS28-211ENST00000530790 V9GY48 417 aaPredicted RBP15.27■□□□□ 0.04
VPS28-211ENST00000530790 COL6A3P12111 3177 aa15.27■□□□□ 0.03
VPS28-211ENST00000530790 NID2Q14112 1375 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 STXBP3O00186 592 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 LGALS2P05162 132 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 IQCF3P0C7M6 154 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 ACTN1P12814 892 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 CDC27P30260 824 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 MTMR1Q13613 665 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 ERICH6BQ5W0A0 696 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 GIMAP8Q8ND71 665 aaPredicted RBP15.26■□□□□ 0.03
VPS28-211ENST00000530790 AFAP1L1Q8TED9 768 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 TIFAQ96CG3 184 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 SENP7Q9BQF6 1050 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 C16orf70Q9BSU1 422 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 PBX4Q9BYU1 374 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 RIC8AQ9NPQ8 531 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 FAM217BQ9NTX9 383 aaPredicted RBP15.26■□□□□ 0.03
VPS28-211ENST00000530790 BARHL2Q9NY43 387 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 PCDHA6Q9UN73 950 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 PCDHA8Q9Y5H6 950 aa15.26■□□□□ 0.03
VPS28-211ENST00000530790 GRXCR1A8MXD5 290 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms