RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 KCNA6P17658 529 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 MAPKAPK2P49137 400 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 PLEKHN1Q494U1 663 aaPredicted RBP6.9□□□□□ -1.3
CD44-230ENST00000528922 DALRD3Q5D0E6 543 aaKnown RBP6.9□□□□□ -1.3
CD44-230ENST00000528922 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.9□□□□□ -1.3
CD44-230ENST00000528922 KRTAP4-8Q9BYQ9 185 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 EPB41L1Q9H4G0 881 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 PLA2G2DQ9UNK4 145 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 CADPSQ9ULU8 1353 aa6.9□□□□□ -1.31
CD44-230ENST00000528922 HRKO00198 91 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 DGKIO75912 1065 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 CKMP06732 381 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 COL6A2P12110 1019 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 NAT1P18440 290 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 SLC6A11P48066 632 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 ABHD17CQ6PCB6 329 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 PIP4K2CQ8TBX8 421 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 PEX11GQ96HA9 241 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 MCOLN1Q9GZU1 580 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 BCAS3Q9H6U6 928 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 DBR1Q9UK59 544 aaKnown RBP6.89□□□□□ -1.31
CD44-230ENST00000528922 CLSPNQ9HAW4 1339 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 HMGXB3Q12766 1538 aa6.89□□□□□ -1.31
CD44-230ENST00000528922 CHD1O14646 1710 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 ABLIM1O14639 778 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 PEX10O60683 326 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 SRSF3P84103 164 aaKnown RBP6.88□□□□□ -1.31
CD44-230ENST00000528922 MESP2Q0VG99 397 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 HABP4Q5JVS0 413 aaKnown RBP6.88□□□□□ -1.31
CD44-230ENST00000528922 EGFLAMQ63HQ2 1017 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 ZC3H14Q6PJT7 736 aaKnown RBP6.88□□□□□ -1.31
CD44-230ENST00000528922 TMC6Q7Z403 805 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 DCP2Q8IU60 420 aaKnown RBP6.88□□□□□ -1.31
CD44-230ENST00000528922 ZC3H7AQ8IWR0 971 aaKnown RBP6.88□□□□□ -1.31
CD44-230ENST00000528922 DHX37Q8IY37 1157 aaKnown RBP6.88□□□□□ -1.31
CD44-230ENST00000528922 SEC14L1Q92503 715 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 NINJ1Q92982 152 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 FBXW5Q969U6 566 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 RNF114Q9Y508 228 aa6.88□□□□□ -1.31
CD44-230ENST00000528922 TNPO3Q9Y5L0 923 aaKnown RBP6.88□□□□□ -1.31
CD44-230ENST00000528922 NKRFO15226 690 aaKnown RBP eCLIP6.87□□□□□ -1.31
CD44-230ENST00000528922 TADA3O75528 432 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 PYGMP11217 842 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 GYS2P54840 703 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 TMEM62Q0P6H9 643 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 ZNF460Q14592 562 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 STEAP3Q658P3 488 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 OTOP3Q7RTS5 596 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 TSPAN17Q96FV3 270 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 SGPP1Q9BX95 441 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 CNTD2Q9H8S5 307 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 SLC6A20Q9NP91 592 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 NUDT5Q9UKK9 219 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 PALD1Q9ULE6 856 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 CBLCQ9ULV8 474 aa6.87□□□□□ -1.31
CD44-230ENST00000528922 TCRBV5S4A2TA0A5A2 114 aa6.86□□□□□ -1.31
CD44-230ENST00000528922 FAM83GA6ND36 823 aa6.86□□□□□ -1.31
CD44-230ENST00000528922 IRS4O14654 1257 aaPredicted RBP6.86□□□□□ -1.31
CD44-230ENST00000528922 HGSO14964 777 aaPredicted RBP6.86□□□□□ -1.31
CD44-230ENST00000528922 GNAT1P11488 350 aa6.86□□□□□ -1.31
CD44-230ENST00000528922 EMC4Q5J8M3 183 aa6.86□□□□□ -1.31
CD44-230ENST00000528922 C16orf59Q7L2K0 433 aa6.86□□□□□ -1.31
CD44-230ENST00000528922 NIM1KQ8IY84 436 aa6.86□□□□□ -1.31
CD44-230ENST00000528922 FBXO15Q8NCQ5 510 aaPredicted RBP6.86□□□□□ -1.31
CD44-230ENST00000528922 AP5M1Q9H0R1 490 aa6.86□□□□□ -1.31
CD44-230ENST00000528922 MBD1Q9UIS9 605 aaPredicted RBP6.86□□□□□ -1.31
CD44-230ENST00000528922 COQ6Q9Y2Z9 468 aa6.86□□□□□ -1.31
CD44-230ENST00000528922 ABCC8Q09428 1581 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 TEX51A0A1B0GUA7 166 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 CCDC66A2RUB6 948 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 OPA1O60313 960 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 ASLP04424 464 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 FBLN1P23142 703 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 DNM2P50570 870 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 ZNF200P98182 395 aaPredicted RBP6.85□□□□□ -1.31
CD44-230ENST00000528922 SPIRE1Q08AE8 756 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 SLC9A5Q14940 896 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 OGFOD2Q6N063 350 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 MILR1Q7Z6M3 343 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 OSTM1Q86WC4 334 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 LDHDQ86WU2 507 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 RBM12BQ8IXT5 1001 aaKnown RBP6.85□□□□□ -1.31
CD44-230ENST00000528922 IGSF22Q8N9C0 903 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 SH3RF2Q8TEC5 729 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 FMNL2Q96PY5 1086 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 SMOC1Q9H4F8 434 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 GCM1Q9NP62 436 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 CATSPERZQ9NTU4 200 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 SIRT5Q9NXA8 310 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 MAGEC2Q9UBF1 373 aaPredicted RBP6.85□□□□□ -1.31
CD44-230ENST00000528922 PLAAQ9Y263 795 aa6.85□□□□□ -1.31
CD44-230ENST00000528922 IRS2Q9Y4H2 1338 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 TCRBV5S2A0A599 114 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 PAX4O43316 350 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 ZBTB7AO95365 584 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 AMY2AP04746 511 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 PDE6AP16499 860 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 AMY2BP19961 511 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 IGFALSP35858 605 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 CDR1P51861 262 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms