RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 STK24Q9Y6E0 443 aa23.66■■□□□ 1.38
VPS28-208ENST00000527797 ARP10275 920 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 GCLCP48506 637 aaPredicted RBP23.65■■□□□ 1.38
VPS28-208ENST00000527797 ERVK-9P63128 1117 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 ERVK-24P63145 666 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 STX1AQ16623 288 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.65■■□□□ 1.38
VPS28-208ENST00000527797 SHCBP1Q8NEM2 672 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 GPRC5AQ8NFJ5 357 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 DNERQ8NFT8 737 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 CDK5RAP3Q96JB5 506 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 PARK7Q99497 189 aaKnown RBP23.65■■□□□ 1.38
VPS28-208ENST00000527797 PTPN18Q99952 460 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 MROH8Q9H579 483 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 TLL2Q9Y6L7 1015 aa23.65■■□□□ 1.38
VPS28-208ENST00000527797 MANSC4A6NHS7 340 aaPredicted RBP23.64■■□□□ 1.38
VPS28-208ENST00000527797 SLC26A4O43511 780 aa23.64■■□□□ 1.38
VPS28-208ENST00000527797 PLCG1P19174 1290 aa23.64■■□□□ 1.38
VPS28-208ENST00000527797 AFMP43652 599 aa23.64■■□□□ 1.38
VPS28-208ENST00000527797 LRCH2Q5VUJ6 765 aa23.64■■□□□ 1.38
VPS28-208ENST00000527797 VSIG10LQ86VR7 867 aa23.64■■□□□ 1.38
VPS28-208ENST00000527797 GRAMD1CQ8IYS0 662 aa23.64■■□□□ 1.38
VPS28-208ENST00000527797 ERMNQ8TAM6 284 aa23.64■■□□□ 1.38
VPS28-208ENST00000527797 PCDHA5Q9Y5H7 936 aa23.64■■□□□ 1.38
VPS28-208ENST00000527797 PRR29P0C7W0 189 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 CCNA1P78396 465 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 SPIRE1Q08AE8 756 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 NAALADL2Q58DX5 795 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 NCAPH2Q6IBW4 605 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 WDR11Q9BZH6 1224 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 MAGEF1Q9HAY2 307 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 KCNH7Q9NS40 1196 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 ANO10Q9NW15 660 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 VAV3Q9UKW4 847 aa23.63■■□□□ 1.37
VPS28-208ENST00000527797 POTEB2H3BUK9 544 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 GAS7O60861 476 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 PSMD10O75832 226 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 SMC2O95347 1197 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 GRB10Q13322 594 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 MTMR1Q13613 665 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 SMARCE1Q969G3 411 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 IWS1Q96ST2 819 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 RIT2Q99578 217 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 NUDT12Q9BQG2 462 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 IPO5O00410 1097 aaKnown RBP23.62■■□□□ 1.37
VPS28-208ENST00000527797 CAVIN2O95810 425 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 SLC10A3P09131 477 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 CCT6AP40227 531 aaKnown RBP23.62■■□□□ 1.37
VPS28-208ENST00000527797 ANO6Q4KMQ2 910 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 HAUS3Q68CZ6 603 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 ANKRD13CQ8N6S4 541 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 PNMA5Q96PV4 448 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 NT5C3AQ9H0P0 336 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 STK17AQ9UEE5 414 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 KDM3AQ9Y4C1 1321 aa23.62■■□□□ 1.37
VPS28-208ENST00000527797 BIN1O00499 593 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 STAM2O75886 525 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 NLRP12P59046 1061 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 CNTN2Q02246 1040 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 KCTD2Q14681 263 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 HYIQ5T013 277 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 WDR78Q5VTH9 848 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 OTOP1Q7RTM1 612 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 NLRX1Q86UT6 975 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 RNF214Q8ND24 703 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 CCDC102AQ96A19 550 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 MMP19Q99542 508 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 TEKT3Q9BXF9 490 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 AGO4Q9HCK5 861 aaKnown RBP23.61■■□□□ 1.37
VPS28-208ENST00000527797 MORF4L1Q9UBU8 362 aa23.61■■□□□ 1.37
VPS28-208ENST00000527797 ADD3Q9UEY8 706 aaKnown RBP23.61■■□□□ 1.37
VPS28-208ENST00000527797 ABT1Q9ULW3 272 aaKnown RBP23.61■■□□□ 1.37
VPS28-208ENST00000527797 TMEM88BA6NKF7 163 aa23.6■■□□□ 1.37
VPS28-208ENST00000527797 GTPBP6O43824 516 aaPredicted RBP23.6■■□□□ 1.37
VPS28-208ENST00000527797 TOMM70O94826 608 aa23.6■■□□□ 1.37
VPS28-208ENST00000527797 SARSP49591 514 aaKnown RBP23.6■■□□□ 1.37
VPS28-208ENST00000527797 PPP2R5CQ13362 524 aa23.6■■□□□ 1.37
VPS28-208ENST00000527797 TMEM119Q4V9L6 283 aa23.6■■□□□ 1.37
VPS28-208ENST00000527797 NT5DC1Q5TFE4 455 aa23.6■■□□□ 1.37
VPS28-208ENST00000527797 STAMQ92783 540 aa23.6■■□□□ 1.37
VPS28-208ENST00000527797 GPRASP2Q96D09 838 aa23.6■■□□□ 1.37
VPS28-208ENST00000527797 MAFGO15525 162 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 FCER1AP12319 257 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 ALDH5A1P51649 535 aaPredicted RBP23.59■■□□□ 1.37
VPS28-208ENST00000527797 DPYDQ12882 1025 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 SPATA20Q8TB22 786 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 MTRQ99707 1265 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 DNAJC25Q9H1X3 360 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 R3HDMLQ9H3Y0 253 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 ZCCHC17Q9NP64 241 aaKnown RBP23.59■■□□□ 1.37
VPS28-208ENST00000527797 KBTBD4Q9NVX7 518 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 MYL1P05976 194 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 INHBEP58166 350 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 FAM133AQ8N9E0 248 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 FAM200AQ8TCP9 573 aa23.59■■□□□ 1.37
VPS28-208ENST00000527797 INPP4AQ96PE3 977 aaPredicted RBP23.59■■□□□ 1.37
VPS28-208ENST00000527797 A0A087WWV3 80 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 B4DLN1 442 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 AMPD3Q01432 767 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 STXBP2Q15833 593 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms