RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NEK11Q8NG66 645 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 DHX36Q9H2U1 1008 aaKnown RBP23.54■■□□□ 1.36
VPS28-205ENST00000526204 COL4A3BPQ9Y5P4 624 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 DUSP10Q9Y6W6 482 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 MACROD2A1Z1Q3 448 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 CASP8Q14790 479 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 DCAF4Q8WV16 495 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 MKL1Q969V6 931 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 CEP63Q96MT8 703 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 NUCKS1Q9H1E3 243 aaKnown RBP23.53■■□□□ 1.36
VPS28-205ENST00000526204 PDE11AQ9HCR9 933 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 H3BQF6 201 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 EPHB6O15197 1021 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 SRGAP2O75044 1071 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 GNA14O95837 355 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 LRRC41Q15345 812 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 DOK7Q18PE1 504 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 MCTP2Q6DN12 878 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 RRAGAQ7L523 313 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 SH2D4AQ9H788 454 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 JADE2Q9NQC1 790 aa23.53■■□□□ 1.36
VPS28-205ENST00000526204 CYP3A7-CYP3A51PA0A087WV96 503 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 AKR1B10O60218 316 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 PLEKP08567 350 aaPredicted RBP23.52■■□□□ 1.36
VPS28-205ENST00000526204 CYP3A7P24462 503 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 EIF4A3P38919 411 aaKnown RBP23.52■■□□□ 1.36
VPS28-205ENST00000526204 MOXD1Q6UVY6 613 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 CAGE1Q8TC20 777 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 BAP1Q92560 729 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 EXOC4Q96A65 974 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 MXD3Q9BW11 206 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 MRIQ9BWK5 157 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 KANSL2Q9H9L4 492 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 NYAP2Q9P242 653 aa23.52■■□□□ 1.36
VPS28-205ENST00000526204 LRRC53A6NM62 1247 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 PRLRP16471 622 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 QRICH1Q2TAL8 776 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 CACNA2D4Q7Z3S7 1137 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 KRT26Q7Z3Y9 468 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 SLFN12Q8IYM2 578 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 ZDHHC15Q96MV8 337 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 KCNMB3Q9NPA1 279 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 PSD3Q9NYI0 1048 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 PCDHA1Q9Y5I3 950 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 SSU72P8A0A1W2PR75 194 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 ERICH4A6NGS2 130 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 TRAF5O00463 557 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 SLC1A4P43007 532 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 CRKP46108 304 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 NLGN1Q8N2Q7 840 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 CAPZA3Q96KX2 299 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 TANGO6Q9C0B7 1094 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 KIAA1024Q9UPX6 916 aa23.51■■□□□ 1.35
VPS28-205ENST00000526204 SSBP05455 408 aaKnown RBP eCLIP23.5■■□□□ 1.35
VPS28-205ENST00000526204 NFIAQ12857 509 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 AP3B2Q13367 1082 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 CCDC40Q4G0X9 1142 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 PDXDC1Q6P996 788 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 GLIS3Q8NEA6 775 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 SYN2Q92777 582 aaPredicted RBP23.5■■□□□ 1.35
VPS28-205ENST00000526204 MBOAT7Q96N66 472 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 ALS2CR12Q96Q35 445 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 VIPAS39Q9H9C1 493 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 ADAM21Q9UKJ8 722 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 SNX12Q9UMY4 172 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 PLA2G4BP0C869 781 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 MAPK8IP2Q13387 824 aaPredicted RBP23.5■■□□□ 1.35
VPS28-205ENST00000526204 PODNQ7Z5L7 613 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 SUGCTQ9HAC7 445 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 CALCOCO1Q9P1Z2 691 aa23.5■■□□□ 1.35
VPS28-205ENST00000526204 GREB1LQ9C091 1923 aaPredicted RBP23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L15C9J2P7 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L13C9JLJ4 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L11C9JVI0 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L18D6R9N7 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L22D6RA61 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L17D6RBQ6 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L19D6RCP7 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L20D6RJB6 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 MARSP56192 900 aaKnown RBP23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L24Q0WX57 530 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 HSP90B2PQ58FF3 399 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 USP17L6PQ6QN14 398 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 ANO3Q9BYT9 981 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 CEP72Q9P209 647 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 PI4KBQ9UBF8 816 aa23.49■■□□□ 1.35
VPS28-205ENST00000526204 PJA2O43164 708 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 EEF2P13639 858 aaKnown RBP23.48■■□□□ 1.35
VPS28-205ENST00000526204 PDE6BP35913 854 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 ITIH3Q06033 890 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 CERKLQ49MI3 558 aaPredicted RBP23.48■■□□□ 1.35
VPS28-205ENST00000526204 CCDC70Q6NSX1 233 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 GJA10Q969M2 543 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 DNAJC18Q9H819 358 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 PCDHA2Q9Y5H9 948 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 PITPNM2Q9BZ72 1349 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 E9PMD0 336 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 MAGEA1P43355 309 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 CDC37Q16543 378 aaPredicted RBP23.48■■□□□ 1.35
VPS28-205ENST00000526204 HAUS3Q68CZ6 603 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms