RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FBXO11Q86XK2 927 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 HOMER1Q86YM7 354 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 RGS22Q8NE09 1264 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 PPP1R13LQ8WUF5 828 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 MTMR8Q96EF0 704 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 THEGQ9P2T0 379 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 SEC63Q9UGP8 760 aaKnown RBP11.69□□□□□ -0.54
VPS28-204ENST00000526054 NOD1Q9Y239 953 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 CHD9Q3L8U1 2897 aa11.69□□□□□ -0.54
VPS28-204ENST00000526054 CHD7Q9P2D1 2997 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 PITPNM1O00562 1244 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 ZBTB5O15062 677 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 PLEKHA8P1O95397 391 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 ACTN1P12814 892 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 IGFBP4P22692 258 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 RFC2P35250 354 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 EVCP57679 992 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 CHMP4BP1P59074 171 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 PTPN11Q06124 597 aaPredicted RBP11.68□□□□□ -0.54
VPS28-204ENST00000526054 ADGRE1Q14246 886 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 SEPT14Q6ZU15 432 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 MCF2L2Q86YR7 1114 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 SYTL5Q8TDW5 730 aaPredicted RBP11.68□□□□□ -0.54
VPS28-204ENST00000526054 NSUN6Q8TEA1 469 aaKnown RBP11.68□□□□□ -0.54
VPS28-204ENST00000526054 VWCEQ96DN2 955 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 RRP36Q96EU6 259 aaKnown RBP11.68□□□□□ -0.54
VPS28-204ENST00000526054 PIGSQ96S52 555 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 AMNQ9BXJ7 453 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 BACH2Q9BYV9 841 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 MAF1Q9H063 256 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 PRDM6Q9NQX0 595 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 PCDHA11Q9Y5I1 949 aa11.68□□□□□ -0.54
VPS28-204ENST00000526054 PNMA6FA0A0J9YX94 578 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 CYTH3O43739 400 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 GH1P01241 217 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 MMP3P08254 477 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 MYOGP15173 224 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 NEK4P51957 841 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 BFSP2Q13515 415 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 CCDC85BQ15834 202 aaPredicted RBP11.67□□□□□ -0.54
VPS28-204ENST00000526054 SLC35G1Q2M3R5 365 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 CCDC62Q6P9F0 684 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 SRBD1Q8N5C6 995 aaKnown RBP11.67□□□□□ -0.54
VPS28-204ENST00000526054 RETREG2Q8NC44 543 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 AFG1LQ8WV93 481 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 ZNF274Q96GC6 653 aaPredicted RBP11.67□□□□□ -0.54
VPS28-204ENST00000526054 SLC9A7Q96T83 725 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 COL20A1Q9P218 1284 aa11.67□□□□□ -0.54
VPS28-204ENST00000526054 MRPL11Q9Y3B7 192 aaKnown RBP11.67□□□□□ -0.54
VPS28-204ENST00000526054 PTPRSQ13332 1948 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 CNTNAP5Q8WYK1 1306 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 COL4A4P53420 1690 aaPredicted RBP11.66□□□□□ -0.54
VPS28-204ENST00000526054 CA3P07451 260 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 IQCF3P0C7M6 154 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 EIF2AK2P19525 551 aaKnown RBP11.66□□□□□ -0.54
VPS28-204ENST00000526054 PDIA3P30101 505 aaKnown RBP11.66□□□□□ -0.54
VPS28-204ENST00000526054 AK2P54819 239 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 ARHGAP1Q07960 439 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 RABEP1Q15276 862 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 STXBP2Q15833 593 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 PTGISQ16647 500 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 LY6KQ17RY6 165 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 ARHGEF16Q5VV41 709 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 CPLX2Q6PUV4 134 aaKnown RBP11.66□□□□□ -0.54
VPS28-204ENST00000526054 CMTR1Q8N1G2 835 aaKnown RBP11.66□□□□□ -0.54
VPS28-204ENST00000526054 CCDC155Q8N6L0 562 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 IL27Q8NEV9 243 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 ATXN2LQ8WWM7 1075 aaKnown RBP11.66□□□□□ -0.54
VPS28-204ENST00000526054 PIBF1Q8WXW3 757 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 TBC1D5Q92609 795 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 TBC1D32Q96NH3 1257 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 TAAR1Q96RJ0 339 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 IWS1Q96ST2 819 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 RMDN3Q96TC7 470 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 FTOQ9C0B1 505 aaKnown RBP eCLIP11.66□□□□□ -0.541e-6■■□□□ 11.8
VPS28-204ENST00000526054 PCDHA1Q9Y5I3 950 aa11.66□□□□□ -0.54
VPS28-204ENST00000526054 TRIP12Q14669 1992 aaPredicted RBP11.66□□□□□ -0.54
VPS28-204ENST00000526054 MYH7BA7E2Y1 1941 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 CPLX1O14810 134 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 CFBP00751 764 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 CDC27P30260 824 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 MICALL1Q8N3F8 863 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 CCDC82Q8N4S0 544 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 CAGE1Q8TC20 777 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 SLKQ9H2G2 1235 aaPredicted RBP11.65□□□□□ -0.54
VPS28-204ENST00000526054 PXMP2Q9NR77 195 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 FAM217BQ9NTX9 383 aaPredicted RBP11.65□□□□□ -0.54
VPS28-204ENST00000526054 MRVI1Q9Y6F6 885 aa11.65□□□□□ -0.54
VPS28-204ENST00000526054 TET1Q8NFU7 2136 aa11.65□□□□□ -0.55
VPS28-204ENST00000526054 NCOR1O75376 2440 aa11.65□□□□□ -0.55
VPS28-204ENST00000526054 PPP1R11O60927 126 aaPredicted RBP11.64□□□□□ -0.55
VPS28-204ENST00000526054 BAIAP3O94812 1187 aa11.64□□□□□ -0.55
VPS28-204ENST00000526054 ADD1P35611 737 aaKnown RBP11.64□□□□□ -0.55
VPS28-204ENST00000526054 CCT2P78371 535 aaKnown RBP11.64□□□□□ -0.55
VPS28-204ENST00000526054 AKAP17AQ02040 695 aaKnown RBP11.64□□□□□ -0.55
VPS28-204ENST00000526054 STK3Q13188 491 aa11.64□□□□□ -0.55
VPS28-204ENST00000526054 DGKDQ16760 1214 aa11.64□□□□□ -0.55
VPS28-204ENST00000526054 GDF6Q6KF10 455 aaPredicted RBP11.64□□□□□ -0.55
VPS28-204ENST00000526054 SESTD1Q86VW0 696 aa11.64□□□□□ -0.55
VPS28-204ENST00000526054 AFAP1L1Q8TED9 768 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms