RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 MTA3Q9BTC8 594 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 ADAMTS10Q9H324 1103 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 SLC52A1Q9NWF4 448 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 CBLCQ9ULV8 474 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 ZKSCAN5Q9Y2L8 839 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 ZNF561-AS1K7EIQ3 104 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 FKBP9O95302 570 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 CD8BP10966 210 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 PDE6AP16499 860 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 CD96P40200 585 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 DNM2P50570 870 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 OCRLQ01968 901 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 FAM50AQ14320 339 aaKnown RBP6.25□□□□□ -1.41
CD44-220ENST00000525688 GPR19Q15760 415 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 ODR4Q5SWX8 454 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 GORABQ5T7V8 394 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 FKBP9P1Q75LS8 142 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 SPRED2Q7Z698 418 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 TEX2Q8IWB9 1127 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 CCDC120Q96HB5 630 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 JAM3Q9BX67 310 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 GULP1Q9UBP9 304 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 TMEM59LQ9UK28 342 aa6.25□□□□□ -1.41
CD44-220ENST00000525688 THRAP3Q9Y2W1 955 aaKnown RBP6.25□□□□□ -1.41
CD44-220ENST00000525688 ERCC6Q03468 1493 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 PTPDC1A2A3K4 754 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 C22orf46C9J442 243 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 K7ESF4 209 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 NRDCO43847 1150 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 KATNA1O75449 491 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 ATP2A2P16615 1042 aaKnown RBP6.24□□□□□ -1.41
CD44-220ENST00000525688 ID4P47928 161 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 RTP1P59025 263 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 CHRNEQ04844 493 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 SPIRE1Q08AE8 756 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 MTMR1Q13613 665 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 HSF5Q4G112 596 aaPredicted RBP6.24□□□□□ -1.41
CD44-220ENST00000525688 RALGPS1Q5JS13 557 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 MROH9Q5TGP6 573 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 CREB3L3Q68CJ9 461 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 OTOP3Q7RTS5 596 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 VSIG10LQ86VR7 867 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 DTX1Q86Y01 620 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 SPPL2CQ8IUH8 684 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 C2orf69Q8N8R5 385 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 TRMT2BQ96GJ1 504 aaKnown RBP6.24□□□□□ -1.41
CD44-220ENST00000525688 KCNJ15Q99712 375 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 ASPSCR1Q9BZE9 553 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 EPB41L1Q9H4G0 881 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 CRTAC1Q9NQ79 661 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 CATSPERZQ9NTU4 200 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 MARCH2Q9P0N8 246 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 SLAMF8Q9P0V8 285 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 ACSL6Q9UKU0 697 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 PDS5BQ9NTI5 1447 aa6.24□□□□□ -1.41
CD44-220ENST00000525688 CCDC88BA6NC98 1476 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 CFTRP13569 1480 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 NOTOA8MTQ0 251 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 ALDH1L1O75891 902 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 AMY2AP04746 511 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 ZBTB48P10074 688 aaPredicted RBP6.23□□□□□ -1.41
CD44-220ENST00000525688 GNAT1P11488 350 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 AMY2BP19961 511 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 FPR2P25090 351 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 IL2P60568 153 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 FAPQ12884 760 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 NR0B2Q15466 257 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 GALNT18Q6P9A2 607 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 HHIPL2Q6UWX4 724 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 CEP128Q6ZU80 1094 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 OSTM1Q86WC4 334 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 LZTR1Q8N653 840 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 PDZD8Q8NEN9 1154 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 CHTF18Q8WVB6 975 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 JDP2Q8WYK2 163 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 SCYL1Q96KG9 808 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 SEMA6BQ9H3T3 888 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 SMURF1Q9HCE7 757 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 EMC7Q9NPA0 242 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 BTG4Q9NY30 223 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 CCDC39Q9UFE4 941 aa6.23□□□□□ -1.41
CD44-220ENST00000525688 G3BP2Q9UN86 482 aaKnown RBP6.23□□□□□ -1.41
CD44-220ENST00000525688 COA3Q9Y2R0 106 aaPredicted RBP6.23□□□□□ -1.41
CD44-220ENST00000525688 TCRBV5S4A2TA0A5A2 114 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 KIAA1324LA8MWY0 1029 aaPredicted RBP6.22□□□□□ -1.41
CD44-220ENST00000525688 ULK1O75385 1050 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 USP2O75604 605 aaPredicted RBP6.22□□□□□ -1.41
CD44-220ENST00000525688 DGKIO75912 1065 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 FUCA1P04066 466 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 FURINP09958 794 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 SPINK2P20155 84 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 FUT4P22083 530 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 CD97P48960 835 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 EPHB1P54762 984 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 JAM2P57087 298 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 TMPRSS15P98073 1019 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 MVKQ03426 396 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 ATP13A4Q4VNC1 1196 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 CCDC181Q5TID7 509 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 SLC23A3Q6PIS1 610 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms