RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 SMC4Q9NTJ3 1288 aa5.87□□□□□ -1.47
CD44-218ENST00000525469 HYPKQ9NX55 129 aa5.87□□□□□ -1.47
CD44-218ENST00000525469 CWC25Q9NXE8 425 aaPredicted RBP5.87□□□□□ -1.47
CD44-218ENST00000525469 DBF4Q9UBU7 674 aaPredicted RBP5.87□□□□□ -1.47
CD44-218ENST00000525469 EGFL7Q9UHF1 273 aa5.87□□□□□ -1.47
CD44-218ENST00000525469 TTF2Q9UNY4 1162 aaKnown RBP5.87□□□□□ -1.47
CD44-218ENST00000525469 V9GYY5 206 aaPredicted RBP5.87□□□□□ -1.47
CD44-218ENST00000525469 PFASO15067 1338 aa5.87□□□□□ -1.47
CD44-218ENST00000525469 MUC3AQ02505 3323 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 LTBP2Q14767 1821 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 AOX1Q06278 1338 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 MBD3O95983 291 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 SELPP16109 830 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 NPR3P17342 541 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 PTPRAP18433 802 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 CES1P23141 567 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 KLRK1P26718 216 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 CTSWP56202 376 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 NUCB2P80303 420 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 SATB1Q01826 763 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 PDE3AQ14432 1141 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 NFE2L2Q16236 605 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 CCDC27Q2M243 656 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 CEP135Q66GS9 1140 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 GADL1Q6ZQY3 521 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 SMC5Q8IY18 1101 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 FAM177A1Q8N128 213 aaPredicted RBP5.86□□□□□ -1.47
CD44-218ENST00000525469 CNPY4Q8N129 248 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 KRT222Q8N1A0 295 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 TXLNBQ8N3L3 684 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 ANKRD13CQ8N6S4 541 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 SNX29Q8TEQ0 813 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 PIBF1Q8WXW3 757 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 MRPL18Q9H0U6 180 aaKnown RBP5.86□□□□□ -1.47
CD44-218ENST00000525469 RASSF4Q9H2L5 321 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 BABAM1Q9NWV8 329 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 JAG2Q9Y219 1238 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 PPME1Q9Y570 386 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 CEP83Q9Y592 693 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 PTPRFP10586 1907 aa5.86□□□□□ -1.47
CD44-218ENST00000525469 PLXNA1Q9UIW2 1896 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 MAST2Q6P0Q8 1798 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 CXCL11O14625 94 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 BRD1O95696 1058 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 USP8P40818 1118 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 GTF2A1P52655 376 aaPredicted RBP5.85□□□□□ -1.47
CD44-218ENST00000525469 CBX1P83916 185 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 AAK1Q2M2I8 961 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 MFSD14BQ5SR56 506 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 MIGA2Q7L4E1 593 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 CCDC91Q7Z6B0 441 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 RNPC3Q96LT9 517 aaKnown RBP5.85□□□□□ -1.47
CD44-218ENST00000525469 SENP6Q9GZR1 1112 aaPredicted RBP5.85□□□□□ -1.47
CD44-218ENST00000525469 DEF6Q9H4E7 631 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 GREM2Q9H772 168 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 PRDM5Q9NQX1 630 aaPredicted RBP5.85□□□□□ -1.47
CD44-218ENST00000525469 FRMPD3Q5JV73 1810 aa5.85□□□□□ -1.47
CD44-218ENST00000525469 PHACTR2O75167 634 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 CCDC172P0C7W6 258 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 NEFHP12036 1026 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 COL6A1P12109 1028 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 EDN3P14138 238 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 IL1R1P14778 569 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 LIG1P18858 919 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 CDC27P30260 824 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 CRKP46108 304 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 CHRNDQ07001 517 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 RAB3GAP1Q15042 981 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 CCDC85BQ15834 202 aaPredicted RBP5.84□□□□□ -1.47
CD44-218ENST00000525469 MUM1L1Q5H9M0 696 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 C9orf50Q5SZB4 431 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 AKNAD1Q5T1N1 836 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 SHISA2Q6UWI4 295 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 FAM83AQ86UY5 434 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 GLYCTKQ8IVS8 523 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 TTLL11Q8NHH1 800 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 ANKRD7Q92527 254 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 CRBNQ96SW2 442 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 PBX4Q9BYU1 374 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 ZNF576Q9H609 170 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 PICK1Q9NRD5 415 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 TPSG1Q9NRR2 321 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 TMEM63CQ9P1W3 806 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 POLIQ9UNA4 740 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 TRIM33Q9UPN9 1127 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 ATP11BQ9Y2G3 1177 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 SLC45A1Q9Y2W3 748 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 PAXBP1Q9Y5B6 917 aa5.84□□□□□ -1.47
CD44-218ENST00000525469 MORC2Q9Y6X9 1032 aaPredicted RBP5.84□□□□□ -1.47
CD44-218ENST00000525469 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.83□□□□□ -1.48
CD44-218ENST00000525469 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.83□□□□□ -1.48
CD44-218ENST00000525469 CTIFO43310 598 aaKnown RBP5.83□□□□□ -1.48
CD44-218ENST00000525469 EIF4EBP3O60516 100 aaPredicted RBP5.83□□□□□ -1.48
CD44-218ENST00000525469 REC8O95072 547 aa5.83□□□□□ -1.48
CD44-218ENST00000525469 DDX58O95786 925 aaKnown RBP5.83□□□□□ -1.48
CD44-218ENST00000525469 TUBB4AP04350 444 aa5.83□□□□□ -1.48
CD44-218ENST00000525469 HOXB7P09629 217 aa5.83□□□□□ -1.48
CD44-218ENST00000525469 H2AFB1P0C5Y9 115 aa5.83□□□□□ -1.48
CD44-218ENST00000525469 H2AFB2P0C5Z0 115 aa5.83□□□□□ -1.48
CD44-218ENST00000525469 ZKSCAN1P17029 563 aaPredicted RBP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms