RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 GRIN2DO15399 1336 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 FRMPD4Q14CM0 1322 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 B4GALT4O60513 344 aa18.67■□□□□ 0.58
LSM1-205ENST00000523511 RGS20O76081 388 aa18.67■□□□□ 0.58
LSM1-205ENST00000523511 SHHQ15465 462 aa18.67■□□□□ 0.58
LSM1-205ENST00000523511 GPKOWQ92917 476 aaPredicted RBP eCLIP18.67■□□□□ 0.58
LSM1-205ENST00000523511 PPP1R12CQ9BZL4 782 aa18.67■□□□□ 0.58
LSM1-205ENST00000523511 CNTNAP5Q8WYK1 1306 aa18.67■□□□□ 0.58
LSM1-205ENST00000523511 CPLX1O14810 134 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 PRPF3O43395 683 aaKnown RBP18.66■□□□□ 0.58
LSM1-205ENST00000523511 SCG2P13521 617 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 ITGB8P26012 769 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 GNA11P29992 359 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 CDC27P30260 824 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 EVCP57679 992 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 ANAPC15P60006 121 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 MRPS9P82933 396 aaKnown RBP18.66■□□□□ 0.58
LSM1-205ENST00000523511 FUT2Q10981 343 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 BFSP2Q13515 415 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 PFKFB3Q16875 520 aaPredicted RBP18.66■□□□□ 0.58
LSM1-205ENST00000523511 WWC2Q6AWC2 1192 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 PSRC1Q6PGN9 363 aaPredicted RBP18.66■□□□□ 0.58
LSM1-205ENST00000523511 TRIM22Q8IYM9 498 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 IL31RAQ8NI17 732 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 GPRASP2Q96D09 838 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 ZNF274Q96GC6 653 aaPredicted RBP18.66■□□□□ 0.58
LSM1-205ENST00000523511 RNPC3Q96LT9 517 aaKnown RBP18.66■□□□□ 0.58
LSM1-205ENST00000523511 C6orf50Q9HD87 102 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 FAM217BQ9NTX9 383 aaPredicted RBP18.66■□□□□ 0.58
LSM1-205ENST00000523511 PDRG1Q9NUG6 133 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 ALPK3Q96L96 1907 aa18.66■□□□□ 0.58
LSM1-205ENST00000523511 UBA1P22314 1058 aaKnown RBP18.65■□□□□ 0.58
LSM1-205ENST00000523511 PDIA3P30101 505 aaKnown RBP18.65■□□□□ 0.58
LSM1-205ENST00000523511 AP3B2Q13367 1082 aa18.65■□□□□ 0.58
LSM1-205ENST00000523511 ANKRD1Q15327 319 aa18.65■□□□□ 0.58
LSM1-205ENST00000523511 METTL7BQ6UX53 244 aa18.65■□□□□ 0.58
LSM1-205ENST00000523511 SESTD1Q86VW0 696 aa18.65■□□□□ 0.58
LSM1-205ENST00000523511 BICD2Q8TD16 824 aa18.65■□□□□ 0.58
LSM1-205ENST00000523511 MCM3APO60318 1980 aa18.64■□□□□ 0.58
LSM1-205ENST00000523511 STXBP3O00186 592 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 CYP2C18P33260 490 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 PSEN2P49810 448 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 MTMR1Q13613 665 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 PTGISQ16647 500 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 UBE2SQ16763 222 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 HSDL1Q3SXM5 330 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 CYFIP1Q7L576 1253 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 ZFP91Q96JP5 570 aaPredicted RBP18.64■□□□□ 0.57
LSM1-205ENST00000523511 RNF26Q9BY78 433 aaPredicted RBP18.64■□□□□ 0.57
LSM1-205ENST00000523511 TRMT13Q9NUP7 481 aaKnown RBP18.64■□□□□ 0.57
LSM1-205ENST00000523511 PCDH10Q9P2E7 1040 aa18.64■□□□□ 0.57
LSM1-205ENST00000523511 FGBP02675 491 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 PFKMP08237 780 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 CSF2RAP15509 400 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 IFNAR1P17181 557 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 RFC2P35250 354 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 ZNF76P36508 570 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 SP2Q02086 613 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 MFSD10Q14728 455 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 KIAA0753Q2KHM9 967 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 CCDC148Q8NFR7 591 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 LRCH3Q96II8 777 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 ALG1Q9BT22 464 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 NOC4LQ9BVI4 516 aaKnown RBP18.63■□□□□ 0.57
LSM1-205ENST00000523511 IL23AQ9NPF7 189 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 JADE2Q9NQC1 790 aa18.63■□□□□ 0.57
LSM1-205ENST00000523511 ZNF215Q9UL58 517 aaPredicted RBP18.63■□□□□ 0.57
LSM1-205ENST00000523511 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.62■□□□□ 0.57
LSM1-205ENST00000523511 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.62■□□□□ 0.57
LSM1-205ENST00000523511 ESYT2A0FGR8 921 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 PITPNM1O00562 1244 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 CDKL5O76039 1030 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 PARNO95453 639 aaKnown RBP18.62■□□□□ 0.57
LSM1-205ENST00000523511 F2P00734 622 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 GNAT1P11488 350 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 HOXD8P13378 290 aaPredicted RBP18.62■□□□□ 0.57
LSM1-205ENST00000523511 CCL23P55773 120 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 CCT2P78371 535 aaKnown RBP18.62■□□□□ 0.57
LSM1-205ENST00000523511 SMAD3P84022 425 aaKnown RBP18.62■□□□□ 0.57
LSM1-205ENST00000523511 SSRP1Q08945 709 aaKnown RBP18.62■□□□□ 0.57
LSM1-205ENST00000523511 C9orf50Q5SZB4 431 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 CAGE1Q8TC20 777 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 TNPO1Q92973 898 aaKnown RBP18.62■□□□□ 0.57
LSM1-205ENST00000523511 SLC26A6Q9BXS9 759 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 NID2Q14112 1375 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 LRRC37A2A6NM11 1700 aa18.62■□□□□ 0.57
LSM1-205ENST00000523511 CEP290O15078 2479 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 LCTP09848 1927 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 H3BRB1 525 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 SOX1O00570 391 aaPredicted RBP18.61■□□□□ 0.57
LSM1-205ENST00000523511 SORBS3O60504 671 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 CYP2C9P11712 490 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 ACTN1P12814 892 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 FAM109BQ6ICB4 259 aaPredicted RBP18.61■□□□□ 0.57
LSM1-205ENST00000523511 KAT2BQ92831 832 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 MXRA8Q9BRK3 442 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 UPF3BQ9BZI7 483 aaKnown RBP18.61■□□□□ 0.57
LSM1-205ENST00000523511 ZMYND12Q9H0C1 365 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 TUT1Q9H6E5 874 aaKnown RBP18.61■□□□□ 0.57
LSM1-205ENST00000523511 SH3GLB2Q9NR46 395 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms