RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 PTCH2Q9Y6C5 1203 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 STRCP1A6NGW2 1772 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 NRXN3Q9Y4C0 1643 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 TLDC2A0PJX2 215 aa9.63□□□□□ -0.87
SDCBP-208ENST00000520228 KIR2DL1P43626 348 aaPredicted RBP9.63□□□□□ -0.87
SDCBP-208ENST00000520228 KIR2DL2P43627 348 aaPredicted RBP9.63□□□□□ -0.87
SDCBP-208ENST00000520228 CYP2R1Q6VVX0 501 aa9.63□□□□□ -0.87
SDCBP-208ENST00000520228 NSMFQ6X4W1 530 aa9.63□□□□□ -0.87
SDCBP-208ENST00000520228 SCUBE1Q8IWY4 988 aa9.63□□□□□ -0.87
SDCBP-208ENST00000520228 PDZD8Q8NEN9 1154 aa9.63□□□□□ -0.87
SDCBP-208ENST00000520228 SYTL4Q96C24 671 aaPredicted RBP9.63□□□□□ -0.87
SDCBP-208ENST00000520228 MRPL42Q9Y6G3 142 aaKnown RBP9.63□□□□□ -0.87
SDCBP-208ENST00000520228 MYOM2P54296 1465 aa9.63□□□□□ -0.87
SDCBP-208ENST00000520228 LRPPRCP42704 1394 aaKnown RBP9.63□□□□□ -0.87
SDCBP-208ENST00000520228 ABCC11Q96J66 1382 aa9.63□□□□□ -0.87
SDCBP-208ENST00000520228 NRXN1Q9ULB1 1477 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 NOTOA8MTQ0 251 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 HPXP02790 462 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 ECI1P42126 302 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 HK2P52789 917 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 PRSS53Q2L4Q9 553 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 FAM209AQ5JX71 171 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 ANKS4BQ8N8V4 417 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 ZSWIM2Q8NEG5 633 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 KCTD13Q8WZ19 329 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 CWC22Q9HCG8 908 aaKnown RBP9.62□□□□□ -0.87
SDCBP-208ENST00000520228 TMEM260Q9NX78 707 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 ADGRE2Q9UHX3 823 aa9.62□□□□□ -0.87
SDCBP-208ENST00000520228 NR0B2Q15466 257 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 TMEM67Q5HYA8 995 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 ACBD5Q5T8D3 534 aaPredicted RBP9.61□□□□□ -0.87
SDCBP-208ENST00000520228 SLCO6A1Q86UG4 719 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 KSR1Q8IVT5 923 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 NLGN1Q8N2Q7 840 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 MMP19Q99542 508 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 DHRS4Q9BTZ2 278 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 RC3H2Q9HBD1 1191 aaKnown RBP9.61□□□□□ -0.87
SDCBP-208ENST00000520228 CLEC1BQ9P126 229 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 PTCH1Q13635 1447 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 FAM135BQ49AJ0 1406 aa9.61□□□□□ -0.87
SDCBP-208ENST00000520228 YTHDC2Q9H6S0 1430 aaKnown RBP9.6□□□□□ -0.87
SDCBP-208ENST00000520228 TRBV23-1A0A0A0MS06 115 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 USP2O75604 605 aaPredicted RBP9.6□□□□□ -0.87
SDCBP-208ENST00000520228 TBC1D8O95759 1140 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 PLS3P13797 630 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 PAMP19021 973 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 L1CAMP32004 1257 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 KCNJ6P48051 423 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 ERVFC1P60507 584 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 CHRNEQ04844 493 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 NTRK3Q16288 839 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 CCDC103Q8IW40 242 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 NAT16Q8N8M0 369 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 FLAD1Q8NFF5 587 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 TMEFF2Q9UIK5 374 aaPredicted RBP9.6□□□□□ -0.87
SDCBP-208ENST00000520228 NPFFR2Q9Y5X5 522 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 DISP3Q9P2K9 1392 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 PPLO60437 1756 aa9.6□□□□□ -0.87
SDCBP-208ENST00000520228 CHD2O14647 1828 aaKnown RBP9.59□□□□□ -0.87
SDCBP-208ENST00000520228 PRAG1Q86YV5 1406 aa9.59□□□□□ -0.87
SDCBP-208ENST00000520228 ADGRL3Q9HAR2 1447 aa9.59□□□□□ -0.87
SDCBP-208ENST00000520228 A0A1W2PQ45 241 aaPredicted RBP9.59□□□□□ -0.87
SDCBP-208ENST00000520228 A0A1W2PQY0 241 aa9.59□□□□□ -0.87
SDCBP-208ENST00000520228 HLA-DQA1Q5Y7H0 255 aa9.59□□□□□ -0.87
SDCBP-208ENST00000520228 E4F1Q66K89 784 aaPredicted RBP9.59□□□□□ -0.87
SDCBP-208ENST00000520228 SPPL2CQ8IUH8 684 aa9.59□□□□□ -0.87
SDCBP-208ENST00000520228 PRAM1Q96QH2 718 aa9.59□□□□□ -0.87
SDCBP-208ENST00000520228 CDC6Q99741 560 aa9.59□□□□□ -0.87
SDCBP-208ENST00000520228 POGKQ9P215 609 aa9.59□□□□□ -0.87
SDCBP-208ENST00000520228 MRPS23Q9Y3D9 190 aaKnown RBP9.59□□□□□ -0.87
SDCBP-208ENST00000520228 TECPR2O15040 1411 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 DCCP43146 1447 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 TRBV23OR9-2A0A075B6M9 112 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 CCDC163A0A0D9SF12 145 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 ESYT3A0FGR9 886 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 FITM1A5D6W6 292 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 EFEMP2O95967 443 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 MBLAC2Q68D91 279 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 OXR1Q8N573 874 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 JMJD8Q96S16 334 aa9.58□□□□□ -0.88
SDCBP-208ENST00000520228 XRN1Q8IZH2 1706 aaKnown RBP9.58□□□□□ -0.88
SDCBP-208ENST00000520228 NPHP3-ACAD11A0A0J9YXS1 232 aa9.57□□□□□ -0.88
SDCBP-208ENST00000520228 ENPP3O14638 875 aa9.57□□□□□ -0.88
SDCBP-208ENST00000520228 NRDCO43847 1150 aa9.57□□□□□ -0.88
SDCBP-208ENST00000520228 C6orf222P0C671 652 aaPredicted RBP9.57□□□□□ -0.88
SDCBP-208ENST00000520228 RTP1P59025 263 aa9.57□□□□□ -0.88
SDCBP-208ENST00000520228 SUMO1P63165 101 aaKnown RBP9.57□□□□□ -0.88
SDCBP-208ENST00000520228 SAFB2Q14151 953 aaKnown RBP eCLIP9.57□□□□□ -0.88
SDCBP-208ENST00000520228 HSF5Q4G112 596 aaPredicted RBP9.57□□□□□ -0.88
SDCBP-208ENST00000520228 TIGD5Q53EQ6 642 aa9.57□□□□□ -0.88
SDCBP-208ENST00000520228 IQCEQ6IPM2 695 aa9.57□□□□□ -0.88
SDCBP-208ENST00000520228 BRINP3Q76B58 766 aa9.57□□□□□ -0.88
SDCBP-208ENST00000520228 TMA7Q9Y2S6 64 aaKnown RBP9.57□□□□□ -0.88
SDCBP-208ENST00000520228 PLEKHH1Q9ULM0 1364 aa9.57□□□□□ -0.88
SDCBP-208ENST00000520228 INF2Q27J81 1249 aa9.56□□□□□ -0.88
SDCBP-208ENST00000520228 CEP128Q6ZU80 1094 aa9.56□□□□□ -0.88
SDCBP-208ENST00000520228 NBPF11Q86T75 865 aa9.56□□□□□ -0.88
SDCBP-208ENST00000520228 ATG4DQ86TL0 474 aaPredicted RBP9.56□□□□□ -0.88
SDCBP-208ENST00000520228 CPNE8Q86YQ8 564 aa9.56□□□□□ -0.88
SDCBP-208ENST00000520228 PPIL6Q8IXY8 311 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms