RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 HAS3O00219 553 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 EPB41L2O43491 1005 aaKnown RBP10.76□□□□□ -0.69
HDAC3-215ENST00000519474 SORBS3O60504 671 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 REC8O95072 547 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 HOXD8P13378 290 aaPredicted RBP10.76□□□□□ -0.69
HDAC3-215ENST00000519474 APOBRQ0VD83 1088 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 PPIGQ13427 754 aaKnown RBP eCLIP10.76□□□□□ -0.691e-6■■□□□ 12.7
HDAC3-215ENST00000519474 DGKDQ16760 1214 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 RTN1Q16799 776 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 HSDL1Q3SXM5 330 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 RASIP1Q5U651 963 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 TYW1BQ6NUM6 668 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 BLOC1S2Q6QNY1 142 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 CUL5Q93034 780 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 INPP4AQ96PE3 977 aaPredicted RBP10.76□□□□□ -0.69
HDAC3-215ENST00000519474 CTAGE1Q96RT6 745 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 IL23AQ9NPF7 189 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 FRMPD4Q14CM0 1322 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 MYH7BA7E2Y1 1941 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 KIAA1217Q5T5P2 1943 aa10.76□□□□□ -0.69
HDAC3-215ENST00000519474 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-215ENST00000519474 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-215ENST00000519474 STAM2O75886 525 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 GGPS1O95749 300 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 FGBP02675 491 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 RPS6KB1P23443 525 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 PSMA5P28066 241 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 PSEN2P49810 448 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 CHMP4BP1P59074 171 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 SMAD3P84022 425 aaKnown RBP10.75□□□□□ -0.69
HDAC3-215ENST00000519474 GLIPR1L2Q4G1C9 344 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 FAM47CQ5HY64 1035 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 PCNX4Q63HM2 1172 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 WWC2Q6AWC2 1192 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 GDF6Q6KF10 455 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-215ENST00000519474 XRRA1Q6P2D8 792 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 SESTD1Q86VW0 696 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 PPTC7Q8NI37 304 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 BRF1Q92994 677 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 SCLYQ96I15 445 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 RNPC3Q96LT9 517 aaKnown RBP10.75□□□□□ -0.69
HDAC3-215ENST00000519474 SPATA33Q96N06 139 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 C16orf70Q9BSU1 422 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 WNT8AQ9H1J5 351 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 SEMA6BQ9H3T3 888 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 MLXIPQ9HAP2 919 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 ZSWIM6Q9HCJ5 1215 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 HDAC6Q9UBN7 1215 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 PCDHA6Q9UN73 950 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 TELO2Q9Y4R8 837 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 PCDHA8Q9Y5H6 950 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 CNTNAP5Q8WYK1 1306 aa10.75□□□□□ -0.69
HDAC3-215ENST00000519474 SCN10AQ9Y5Y9 1956 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 GOLGA8AA7E2F4 631 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 GOLGA8BA8MQT2 603 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 ATP9AO75110 1047 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 IQCF3P0C7M6 154 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 UBA1P22314 1058 aaKnown RBP10.74□□□□□ -0.69
HDAC3-215ENST00000519474 RCAN1P53805 252 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 EVCP57679 992 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 ZNF200P98182 395 aaPredicted RBP10.74□□□□□ -0.69
HDAC3-215ENST00000519474 HIC1Q14526 733 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 GPNMBQ14956 572 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 NTRK3Q16288 839 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 PKN1Q16512 942 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 PTGISQ16647 500 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 UBE2SQ16763 222 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 CYFIP1Q7L576 1253 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 HEATR3Q7Z4Q2 680 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 RPUSD2Q8IZ73 545 aaKnown RBP10.74□□□□□ -0.69
HDAC3-215ENST00000519474 HERVK_113Q902F9 699 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 SENP7Q9BQF6 1050 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 ALG1Q9BT22 464 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 RIC8AQ9NPQ8 531 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 UBIAD1Q9Y5Z9 338 aa10.74□□□□□ -0.69
HDAC3-215ENST00000519474 DNAH12Q6ZR08 3092 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 SMCO2A6NFE2 343 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 GRXCR1A8MXD5 290 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 STXBP3O00186 592 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 ADAMTS3O15072 1205 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 PRPF3O43395 683 aaKnown RBP10.73□□□□□ -0.69
HDAC3-215ENST00000519474 FIBPO43427 364 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 ITGB5P18084 799 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 PDIA3P30101 505 aaKnown RBP10.73□□□□□ -0.69
HDAC3-215ENST00000519474 NEDD9Q14511 834 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 MFSD10Q14728 455 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 KIAA0753Q2KHM9 967 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 RUFY3Q7L099 469 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 BARHL2Q9NY43 387 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 CXXC1Q9P0U4 656 aaPredicted RBP10.73□□□□□ -0.69
HDAC3-215ENST00000519474 GTF2IRD1Q9UHL9 959 aa10.73□□□□□ -0.69
HDAC3-215ENST00000519474 NAP1L2Q9ULW6 460 aaPredicted RBP10.73□□□□□ -0.69
HDAC3-215ENST00000519474 CCDC196A0A1B0GTZ2 297 aa10.72□□□□□ -0.69
HDAC3-215ENST00000519474 H3BRB1 525 aa10.72□□□□□ -0.69
HDAC3-215ENST00000519474 MAFGO15525 162 aa10.72□□□□□ -0.69
HDAC3-215ENST00000519474 F2P00734 622 aa10.72□□□□□ -0.69
HDAC3-215ENST00000519474 CLK2P49760 499 aaKnown RBP10.72□□□□□ -0.69
HDAC3-215ENST00000519474 METAP2P50579 478 aaKnown RBP eCLIP10.72□□□□□ -0.69
HDAC3-215ENST00000519474 NAPAP54920 295 aa10.72□□□□□ -0.69
HDAC3-215ENST00000519474 TOB2Q14106 344 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms