RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 NELFAQ9H3P2 528 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 C19orf44Q9H6X5 657 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SEC61A2Q9H9S3 476 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 HOMER2Q9NSB8 354 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CACNA2D2Q9NY47 1150 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GABBR1Q9UBS5 961 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SUCOQ9UBS9 1254 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 MBD1Q9UIS9 605 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GGT7Q9UJ14 662 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ANAPC4Q9UJX5 808 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SYNPO2Q9UMS6 1093 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 G3BP2Q9UN86 482 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CLCA2Q9UQC9 943 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FHOD1Q9Y613 1164 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 MRPL42Q9Y6G3 142 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC163A0A0D9SF12 145 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC189A1A4V9 331 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ANKRD34BA5PLL1 514 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM221BA6H8Z2 402 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 C2orf71A6NGG8 1288 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 GOLGA8BA8MQT2 603 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FADS2P1A8MWK0 482 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MINDY4BA8MYZ0 360 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRR33A8MZF0 331 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ALG1L2C9J202 215 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 H7BY64 318 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 IFRD1O00458 451 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 EXOC5O00471 708 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TNFRSF10CO14798 259 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 IKBKBO14920 756 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 HGSO14964 777 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MEFVO15553 781 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 DAPK3O43293 454 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TRIM13O60858 407 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 RAMP2O60895 175 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MFAP3LO75121 409 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF623O75123 536 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 H2AFYO75367 372 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FBXO24O75426 580 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 IPO13O94829 963 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRAMEF1O95521 474 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MYL1P05976 194 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CD3EP07766 207 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CTSBP07858 339 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SNRPB2P08579 225 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CELA3AP09093 270 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ENO2P09104 434 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SPATA31D3P0C874 917 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CD247P20963 164 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CTGFP29279 349 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PMLP29590 882 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 HOXC12P31275 282 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 GJA4P35212 333 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ETFBP38117 255 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 GNALP38405 381 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC6A11P48066 632 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SOX9P48436 509 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 NASPP49321 788 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PMS1P54277 932 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 USP14P54578 494 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 EPHB1P54762 984 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 EIF6P56537 245 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADAM17P78536 824 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRR5P85299 388 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF200P98182 395 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC7A5Q01650 507 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 POU5F1BQ06416 359 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 DPTQ07507 201 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 IFRD2Q12894 506 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PAK2Q13177 524 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CRHR2Q13324 411 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 RAPGEF1Q13905 1077 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SEPT6Q14141 434 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MORC3Q14149 939 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SAFB2Q14151 953 aaKnown RBP eCLIP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FHL2Q14192 279 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM50AQ14320 339 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 DHX8Q14562 1220 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 INPP5AQ14642 412 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 RTP5Q14D33 572 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 BRD3Q15059 726 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPP2R5AQ15172 486 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PTPAQ15257 358 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TCEA2Q15560 299 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAPRE1Q15691 268 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 NKG7Q16617 165 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 NFE2Q16621 373 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAN2A1Q16706 1144 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 GNPTABQ3T906 1256 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLEKHN1Q494U1 663 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 NRN1LQ496H8 165 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAP9Q49MG5 647 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZC3H12BQ5HYM0 836 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 WDR78Q5VTH9 848 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 DCAF15Q66K64 600 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 WWC2Q6AWC2 1192 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 RCSD1Q6JBY9 416 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRTAP5-4Q6L8H1 288 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MFSD5Q6N075 450 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ARMC6Q6NXE6 501 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms