RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CCSAPQ6IQ19 270 aaPredicted RBP16.27■□□□□ 0.2
NUP54-216ENST00000514901 NIPA1Q7RTP0 329 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 KRT25Q7Z3Z0 450 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 GIMAP8Q8ND71 665 aaPredicted RBP16.27■□□□□ 0.2
NUP54-216ENST00000514901 PGBD1Q96JS3 809 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 MXRA8Q9BRK3 442 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 HTATIP2Q9BUP3 242 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 PHF24Q9UPV7 400 aa16.27■□□□□ 0.2
NUP54-216ENST00000514901 MKI67P46013 3256 aaKnown RBP16.27■□□□□ 0.19
NUP54-216ENST00000514901 FRMPD3Q5JV73 1810 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 CTAGE5O15320 804 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 CABYRO75952 493 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 ITGB5P18084 799 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 KRT2P35908 639 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 MLLT1Q03111 559 aaPredicted RBP16.26■□□□□ 0.19
NUP54-216ENST00000514901 MTMR1Q13613 665 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 SAFBQ15424 915 aaKnown RBP eCLIP16.26■□□□□ 0.19
NUP54-216ENST00000514901 CELF3Q5SZQ8 465 aaKnown RBP16.26■□□□□ 0.19
NUP54-216ENST00000514901 TMEM63BQ5T3F8 832 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 DHX37Q8IY37 1157 aaKnown RBP16.26■□□□□ 0.19
NUP54-216ENST00000514901 RASGRP4Q8TDF6 673 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 DIS3LQ8TF46 1054 aaKnown RBP16.26■□□□□ 0.19
NUP54-216ENST00000514901 CRYGNQ8WXF5 182 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 SNX21Q969T3 373 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 ZFP91Q96JP5 570 aaPredicted RBP16.26■□□□□ 0.19
NUP54-216ENST00000514901 C8orf76Q96K31 380 aa16.26■□□□□ 0.19
NUP54-216ENST00000514901 SENP6Q9GZR1 1112 aaPredicted RBP16.26■□□□□ 0.19
NUP54-216ENST00000514901 CCDC194A0A1B0GVG4 234 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 A6NJR5 290 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 MEIS1O00470 390 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 ADAMTS3O15072 1205 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 DTNBO60941 627 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 MMP1P03956 469 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 CIITAP33076 1130 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 ACLYP53396 1101 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 ARHGAP1Q07960 439 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 NONOQ15233 471 aaKnown RBP eCLIP16.25■□□□□ 0.19
NUP54-216ENST00000514901 MYSM1Q5VVJ2 828 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 KRT40Q6A162 431 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 COPS5Q92905 334 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 MLXIPQ9HAP2 919 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 POLR3EQ9NVU0 708 aa16.25■□□□□ 0.19
NUP54-216ENST00000514901 ELP1O95163 1332 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 MYADML2A6NDP7 307 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 GGPS1O95749 300 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 ASGR1P07306 291 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 UBA1P22314 1058 aaKnown RBP16.24■□□□□ 0.19
NUP54-216ENST00000514901 BEX3Q00994 111 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 SP2Q02086 613 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 SEMA3FQ13275 785 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 CUL4AQ13619 759 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 FBXO18Q8NFZ0 1043 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 PPTC7Q8NI37 304 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 TBCKQ8TEA7 893 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 GLT1D1Q96MS3 346 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 SEZ6LQ9BYH1 1024 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 GJB4Q9NTQ9 266 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 SMC3Q9UQE7 1217 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 PDE4DIPQ5VU43 2346 aa16.24■□□□□ 0.19
NUP54-216ENST00000514901 SETQ01105 290 aaPredicted RBP16.23■□□□□ 0.19
NUP54-216ENST00000514901 DGKDQ16760 1214 aa16.23■□□□□ 0.19
NUP54-216ENST00000514901 METTL7BQ6UX53 244 aa16.23■□□□□ 0.19
NUP54-216ENST00000514901 AFG1LQ8WV93 481 aa16.23■□□□□ 0.19
NUP54-216ENST00000514901 SPATA33Q96N06 139 aa16.23■□□□□ 0.19
NUP54-216ENST00000514901 KCNH7Q9NS40 1196 aa16.23■□□□□ 0.19
NUP54-216ENST00000514901 MYH7BA7E2Y1 1941 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 CYP3A7-CYP3A51PA0A087WV96 503 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 A0A1W2PQ45 241 aaPredicted RBP16.22■□□□□ 0.19
NUP54-216ENST00000514901 A0A1W2PQY0 241 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 K7ELQ4 463 aaPredicted RBP16.22■□□□□ 0.19
NUP54-216ENST00000514901 PPFIA4O75335 1185 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 PTGS1P23219 599 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 CYP3A7P24462 503 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 C1orf53Q5VUE5 145 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 MOXD1Q6UVY6 613 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 SLC39A5Q6ZMH5 540 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 PLA2G4DQ86XP0 818 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 DIS3L2Q8IYB7 885 aaKnown RBP16.22■□□□□ 0.19
NUP54-216ENST00000514901 CYP2W1Q8TAV3 490 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 OXER1Q8TDS5 423 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 FERMT2Q96AC1 680 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 VTI1AQ96AJ9 217 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 INTS4Q96HW7 963 aaKnown RBP16.22■□□□□ 0.19
NUP54-216ENST00000514901 NAP1L4Q99733 375 aaKnown RBP16.22■□□□□ 0.19
NUP54-216ENST00000514901 MTG1Q9BT17 334 aaPredicted RBP16.22■□□□□ 0.19
NUP54-216ENST00000514901 STARD7Q9NQZ5 370 aa16.22■□□□□ 0.19
NUP54-216ENST00000514901 NFASCO94856 1347 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 BTBD18B2RXH4 712 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 FAM86B1E9PN63 330 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 MMP3P08254 477 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 MYL3P08590 195 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 FAM86B2P0C5J1 330 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 KCNA2P16389 499 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 GJB2P29033 226 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 FOSBP53539 338 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 IRX5P78411 483 aaPredicted RBP16.21■□□□□ 0.19
NUP54-216ENST00000514901 CXCL17Q6UXB2 119 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 PIK3AP1Q6ZUJ8 805 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 CYFIP1Q7L576 1253 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 NEK8Q86SG6 692 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms