RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 ADCY7P51828 1080 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 TNFAIP2Q03169 654 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 MUM1L1Q5H9M0 696 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 C9orf50Q5SZB4 431 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 FAM109BQ6ICB4 259 aaPredicted RBP23.07■■□□□ 1.28
USP53-208ENST00000514305 CLEC4DQ8WXI8 215 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 KATNBL1Q9H079 304 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 CYP39A1Q9NYL5 469 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 LAMA2P24043 3122 aaKnown RBP23.07■■□□□ 1.28
USP53-208ENST00000514305 LCTP09848 1927 aa23.06■■□□□ 1.28
USP53-208ENST00000514305 LOC102724159A0A0B4J2E5 919 aa23.06■■□□□ 1.28
USP53-208ENST00000514305 PDCP20941 246 aa23.06■■□□□ 1.28
USP53-208ENST00000514305 FAAP100Q0VG06 881 aa23.06■■□□□ 1.28
USP53-208ENST00000514305 PWP2Q15269 919 aaKnown RBP23.06■■□□□ 1.28
USP53-208ENST00000514305 SAFBQ15424 915 aaKnown RBP eCLIP23.06■■□□□ 1.28
USP53-208ENST00000514305 ZNF697Q5TEC3 545 aa23.06■■□□□ 1.28
USP53-208ENST00000514305 ZMYND12Q9H0C1 365 aa23.06■■□□□ 1.28
USP53-208ENST00000514305 A0A0U1RQG5 324 aaPredicted RBP23.05■■□□□ 1.28
USP53-208ENST00000514305 NFIBO00712 420 aa23.05■■□□□ 1.28
USP53-208ENST00000514305 JAK2O60674 1132 aa23.05■■□□□ 1.28
USP53-208ENST00000514305 PPFIA3O75145 1194 aa23.05■■□□□ 1.28
USP53-208ENST00000514305 FOSP01100 380 aaPredicted RBP23.05■■□□□ 1.28
USP53-208ENST00000514305 RPS6P62753 249 aaKnown RBP23.05■■□□□ 1.28
USP53-208ENST00000514305 IRX5P78411 483 aaPredicted RBP23.05■■□□□ 1.28
USP53-208ENST00000514305 FPGSQ05932 587 aa23.05■■□□□ 1.28
USP53-208ENST00000514305 ST3GAL1Q11201 340 aa23.05■■□□□ 1.28
USP53-208ENST00000514305 BAATQ14032 418 aaPredicted RBP23.05■■□□□ 1.28
USP53-208ENST00000514305 C8orf76Q96K31 380 aa23.05■■□□□ 1.28
USP53-208ENST00000514305 RIC8AQ9NPQ8 531 aa23.05■■□□□ 1.28
USP53-208ENST00000514305 BAZ2BQ9UIF8 2168 aaKnown RBP23.05■■□□□ 1.28
USP53-208ENST00000514305 MYH6P13533 1939 aa23.04■■□□□ 1.28
USP53-208ENST00000514305 PIK3CDO00329 1044 aa23.04■■□□□ 1.28
USP53-208ENST00000514305 ITGB8P26012 769 aa23.04■■□□□ 1.28
USP53-208ENST00000514305 GJB2P29033 226 aa23.04■■□□□ 1.28
USP53-208ENST00000514305 GHRHRQ02643 423 aa23.04■■□□□ 1.28
USP53-208ENST00000514305 DNERQ8NFT8 737 aa23.04■■□□□ 1.28
USP53-208ENST00000514305 AP5M1Q9H0R1 490 aa23.04■■□□□ 1.28
USP53-208ENST00000514305 VPS54Q9P1Q0 977 aa23.04■■□□□ 1.28
USP53-208ENST00000514305 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.03■■□□□ 1.28
USP53-208ENST00000514305 SPDYE3A6NKU9 549 aa23.03■■□□□ 1.28
USP53-208ENST00000514305 TLR3O15455 904 aaKnown RBP23.03■■□□□ 1.28
USP53-208ENST00000514305 FDPSP14324 419 aaKnown RBP23.03■■□□□ 1.28
USP53-208ENST00000514305 HSD17B4P51659 736 aa23.03■■□□□ 1.28
USP53-208ENST00000514305 TLK2Q86UE8 772 aa23.03■■□□□ 1.28
USP53-208ENST00000514305 RNPC3Q96LT9 517 aaKnown RBP23.03■■□□□ 1.28
USP53-208ENST00000514305 FAM161BQ96MY7 647 aa23.03■■□□□ 1.28
USP53-208ENST00000514305 NKX3-2P78367 333 aa23.02■■□□□ 1.28
USP53-208ENST00000514305 SMAD3P84022 425 aaKnown RBP23.02■■□□□ 1.28
USP53-208ENST00000514305 AP3B2Q13367 1082 aa23.02■■□□□ 1.28
USP53-208ENST00000514305 EEPD1Q7L9B9 569 aa23.02■■□□□ 1.28
USP53-208ENST00000514305 FBXO16Q8IX29 292 aaPredicted RBP23.02■■□□□ 1.28
USP53-208ENST00000514305 VTA1Q9NP79 307 aa23.02■■□□□ 1.28
USP53-208ENST00000514305 ASTN1O14525 1302 aa23.02■■□□□ 1.28
USP53-208ENST00000514305 H3BQV1 296 aa23.01■■□□□ 1.27
USP53-208ENST00000514305 ARVCFO00192 962 aa23.01■■□□□ 1.27
USP53-208ENST00000514305 ZEB2O60315 1214 aa23.01■■□□□ 1.27
USP53-208ENST00000514305 TIMP1P01033 207 aa23.01■■□□□ 1.27
USP53-208ENST00000514305 CDK7P50613 346 aa23.01■■□□□ 1.27
USP53-208ENST00000514305 BEX3Q00994 111 aa23.01■■□□□ 1.27
USP53-208ENST00000514305 IQSEC1Q6DN90 963 aa23.01■■□□□ 1.27
USP53-208ENST00000514305 NSUN6Q8TEA1 469 aaKnown RBP23.01■■□□□ 1.27
USP53-208ENST00000514305 PCDHA4Q9UN74 947 aa23.01■■□□□ 1.27
USP53-208ENST00000514305 GNEQ9Y223 722 aaKnown RBP23.01■■□□□ 1.27
USP53-208ENST00000514305 CABYRO75952 493 aa23■■□□□ 1.27
USP53-208ENST00000514305 FSCN1Q16658 493 aaKnown RBP23■■□□□ 1.27
USP53-208ENST00000514305 ARHGEF16Q5VV41 709 aa23■■□□□ 1.27
USP53-208ENST00000514305 LARP1BQ659C4 914 aaKnown RBP23■■□□□ 1.27
USP53-208ENST00000514305 BLIDQ8IZY5 108 aa23■■□□□ 1.27
USP53-208ENST00000514305 REXO1Q8N1G1 1221 aaKnown RBP23■■□□□ 1.27
USP53-208ENST00000514305 DAGLBQ8NCG7 672 aa23■■□□□ 1.27
USP53-208ENST00000514305 SYTL5Q8TDW5 730 aaPredicted RBP23■■□□□ 1.27
USP53-208ENST00000514305 IWS1Q96ST2 819 aa23■■□□□ 1.27
USP53-208ENST00000514305 PHF20Q9BVI0 1012 aa23■■□□□ 1.27
USP53-208ENST00000514305 TBX21Q9UL17 535 aa23■■□□□ 1.27
USP53-208ENST00000514305 MEIS2O14770 477 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 CTAGE5O15320 804 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 DYNC1LI2O43237 492 aaPredicted RBP22.99■■□□□ 1.27
USP53-208ENST00000514305 SMPD1P17405 629 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 KRT2P35908 639 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 ALDH5A1P51649 535 aaPredicted RBP22.99■■□□□ 1.27
USP53-208ENST00000514305 GNL2Q13823 731 aaKnown RBP22.99■■□□□ 1.27
USP53-208ENST00000514305 TAPT1Q6NXT6 567 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 FCHSD1Q86WN1 690 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 GUCD1Q96NT3 240 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 PURBQ96QR8 312 aaKnown RBP22.99■■□□□ 1.27
USP53-208ENST00000514305 RMDN3Q96TC7 470 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 PDGFCQ9NRA1 345 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 Q9Y3F1 56 aa22.99■■□□□ 1.27
USP53-208ENST00000514305 DDX49Q9Y6V7 483 aaKnown RBP22.99■■□□□ 1.27
USP53-208ENST00000514305 OPLAHO14841 1288 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 EPHB4P54760 987 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 MFSD5Q6N075 450 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 TYW1BQ6NUM6 668 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 USP17L6PQ6QN14 398 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 CXCL17Q6UXB2 119 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 SLC30A10Q6XR72 485 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 FAM126BQ8IXS8 530 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 FBXO18Q8NFZ0 1043 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 MORC4Q8TE76 937 aa22.98■■□□□ 1.27
USP53-208ENST00000514305 TBC1D5Q92609 795 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms