RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SYTL5Q8TDW5 730 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 SCLYQ96I15 445 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 ALDH5A1P51649 535 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 SSRP1Q08945 709 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 LETM2Q2VYF4 491 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 PRR16Q569H4 304 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 MORN1Q5T089 497 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 MAEAQ7L5Y9 396 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 OTOP2Q7RTS6 562 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 TMCO2Q7Z6W1 182 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 FAM177A1Q8N128 213 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 TRPV6Q9H1D0 765 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 RASSF4Q9H2L5 321 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 GINM1Q9NU53 330 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 MYH8P13535 1937 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 AKR1A1P14550 325 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 CSPP1Q1MSJ5 1256 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 SCLT1Q96NL6 688 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 TMEM39AQ9NV64 488 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 DDX60LQ5H9U9 1706 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 ARAP2Q8WZ64 1704 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 UPP2O95045 317 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 ARIH2O95376 493 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 SMPD1P17405 629 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 PDIA3P30101 505 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 ZNF200P98182 395 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 LRRC41Q15345 812 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 STXBP2Q15833 593 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 CHST13Q8NET6 341 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 NSUN6Q8TEA1 469 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 SPATA33Q96N06 139 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 FTOQ9C0B1 505 aaKnown RBP eCLIP8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 TRMT13Q9NUP7 481 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 ADGRA2Q96PE1 1338 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 PNMA6FA0A0J9YX94 578 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 SEPT4O43236 478 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 CYP2C18P33260 490 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 GJA8P48165 433 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 GRM4Q14833 912 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 LRRC26Q2I0M4 334 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 CCDC178Q5BJE1 867 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 ABHD16BQ9H3Z7 469 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 C11orf49Q9H6J7 331 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 SUFUQ9UMX1 484 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 NR2E3Q9Y5X4 410 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 MYH7P12883 1935 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 FAM205CA6NFA0 338 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 DHX8Q14562 1220 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 ACRBPQ8NEB7 543 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 REPS2Q8NFH8 660 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 ATL2Q8NHH9 583 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 SHISA4Q96DD7 197 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 BRWD1Q9NSI6 2320 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 SLC45A1Q9Y2W3 748 aa8.92□□□□□ -0.98
LIMCH1-219ENST00000514096 ASTN1O14525 1302 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 PALM3A6NDB9 673 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 NR5A1Q13285 461 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 FSCN1Q16658 493 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 ME3Q16798 604 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 SKIDA1Q1XH10 827 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 INF2Q27J81 1249 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 PIK3AP1Q6ZUJ8 805 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 ARRDC4Q8NCT1 418 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 PLIN2Q99541 437 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 COLQQ9Y215 455 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 CAND2O75155 1236 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 TPM3P06753 285 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 ADCY7P51828 1080 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 SCRN1Q12765 414 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 TOB2Q14106 344 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 TRIM29Q14134 588 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 SF3A1Q15459 793 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 HSDL1Q3SXM5 330 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 C8orf34Q49A92 452 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 TMTC3Q6ZXV5 915 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 RNF169Q8NCN4 708 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 TRAPPC12Q8WVT3 735 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 CLEC4DQ8WXI8 215 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 HTATIP2Q9BUP3 242 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 UBE2OQ9C0C9 1292 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 RANBP17Q9H2T7 1088 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 SLC24A3Q9HC58 644 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 ROBO3Q96MS0 1386 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 ZNF646O15015 1829 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 DOCK1Q14185 1865 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 CD2BP2O95400 341 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 TTC19Q6DKK2 380 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 METTL13Q8N6R0 699 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 ZCCHC17Q9NP64 241 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 TRPC6Q9Y210 931 aa8.91□□□□□ -0.98
LIMCH1-219ENST00000514096 ASB14A6NK59 587 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 H3BQV1 296 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 CSDE1O75534 798 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 RTP1P59025 263 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 ZNF792Q3KQV3 632 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 PXYLP1Q8TE99 480 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 GTF3C2Q8WUA4 911 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 ARMC5Q96C12 935 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 SUGCTQ9HAC7 445 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 CPSF2Q9P2I0 782 aaKnown RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms