RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TRAV20A0A0B4J274 112 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 NPHP3-ACAD11A0A0J9YXS1 232 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 A0A1W2PQJ5 194 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 ZC3H12DA2A288 527 aaKnown RBP5.57□□□□□ -1.52
NUP54-212ENST00000513248 C6orf222P0C671 652 aaPredicted RBP5.57□□□□□ -1.52
NUP54-212ENST00000513248 PLS3P13797 630 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 TACR1P25103 407 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 CDR1P51861 262 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 CAP1Q01518 475 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 IFRD2Q12894 506 aaPredicted RBP5.57□□□□□ -1.52
NUP54-212ENST00000513248 PRSS53Q2L4Q9 553 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 E4F1Q66K89 784 aaPredicted RBP5.57□□□□□ -1.52
NUP54-212ENST00000513248 BICRALQ6AI39 1079 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 CNKSR3Q6P9H4 555 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 FRMD5Q7Z6J6 570 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 FAM129CQ86XR2 697 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 CPNE8Q86YQ8 564 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 SCUBE1Q8IWY4 988 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 TMEFF1Q8IYR6 380 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 LINC01356Q8N9X3 169 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 MRFAP1L1Q96HT8 127 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 IER2Q9BTL4 223 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 CDIP1Q9H305 208 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 TMEM260Q9NX78 707 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 CLEC1BQ9P126 229 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 KLHL14Q9P2G3 628 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 IQGAP2Q13576 1575 aa5.57□□□□□ -1.52
NUP54-212ENST00000513248 ADAMTS20P59510 1910 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 PRODHO43272 600 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 SRGAP3O43295 1099 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 SNRPB2P08579 225 aaKnown RBP5.56□□□□□ -1.52
NUP54-212ENST00000513248 NR1I3Q14994 352 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 INF2Q27J81 1249 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 GIMAP6Q6P9H5 292 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 NSMFQ6X4W1 530 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 RPTNQ6XPR3 784 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 TMC6Q7Z403 805 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 JAZF1Q86VZ6 243 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 Q8N1Y9 231 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 FEZF2Q8TBJ5 459 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 DPF3Q92784 378 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 MTA3Q9BTC8 594 aa5.56□□□□□ -1.52
NUP54-212ENST00000513248 C7orf72A4D263 438 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 KCNQ2O43526 872 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 NPHS1O60500 1241 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 CYBBP04839 570 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 DBHP09172 617 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 RBM10P98175 930 aaKnown RBP5.55□□□□□ -1.52
NUP54-212ENST00000513248 EFEMP1Q12805 493 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 CBX2Q14781 532 aaPredicted RBP5.55□□□□□ -1.52
NUP54-212ENST00000513248 PLEKHN1Q494U1 663 aaPredicted RBP5.55□□□□□ -1.52
NUP54-212ENST00000513248 SPATS1Q496A3 300 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 FAM209AQ5JX71 171 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 IQCEQ6IPM2 695 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 RSPO2Q6UXX9 243 aaPredicted RBP5.55□□□□□ -1.52
NUP54-212ENST00000513248 IGDCC3Q8IVU1 814 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 SH3TC2Q8TF17 1288 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 FBXO41Q8TF61 875 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 KCTD13Q8WZ19 329 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 DHRS4Q9BTZ2 278 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 GULP1Q9UBP9 304 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 RWDD3Q9Y3V2 267 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 PTCH2Q9Y6C5 1203 aa5.55□□□□□ -1.52
NUP54-212ENST00000513248 GOLGA3Q08378 1498 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 CCDC163A0A0D9SF12 145 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 ECI1P42126 302 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 MAPKAPK2P49137 400 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 TRIM61Q5EBN2 209 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 STYK1Q6J9G0 422 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 PAQR3Q6TCH7 311 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 GGNQ86UU5 652 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 CABP7Q86V35 215 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 LDHDQ86WU2 507 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 NLGN1Q8N2Q7 840 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 LZTR1Q8N653 840 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 RCBTB1Q8NDN9 531 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 ZSWIM2Q8NEG5 633 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 FBLN5Q9UBX5 448 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 CNOT11Q9UKZ1 510 aaKnown RBP5.54□□□□□ -1.52
NUP54-212ENST00000513248 MRPS23Q9Y3D9 190 aaKnown RBP5.54□□□□□ -1.52
NUP54-212ENST00000513248 PCDHA5Q9Y5H7 936 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 EEA1Q15075 1411 aa5.54□□□□□ -1.52
NUP54-212ENST00000513248 TRBV23-1A0A0A0MS06 115 aa5.53□□□□□ -1.52
NUP54-212ENST00000513248 GLI4P10075 376 aa5.53□□□□□ -1.52
NUP54-212ENST00000513248 KCNJ6P48051 423 aa5.53□□□□□ -1.52
NUP54-212ENST00000513248 KCNAB2Q13303 367 aa5.53□□□□□ -1.52
NUP54-212ENST00000513248 ZC3H14Q6PJT7 736 aaKnown RBP5.53□□□□□ -1.52
NUP54-212ENST00000513248 GSTCDQ8NEC7 633 aa5.53□□□□□ -1.52
NUP54-212ENST00000513248 GPR27Q9NS67 375 aa5.53□□□□□ -1.52
NUP54-212ENST00000513248 ASXL2Q76L83 1435 aa5.53□□□□□ -1.52
NUP54-212ENST00000513248 UACAQ9BZF9 1416 aa5.53□□□□□ -1.52
NUP54-212ENST00000513248 LMTK3Q96Q04 1460 aa5.52□□□□□ -1.53
NUP54-212ENST00000513248 TLDC2A0PJX2 215 aa5.52□□□□□ -1.53
NUP54-212ENST00000513248 ENPP3O14638 875 aa5.52□□□□□ -1.53
NUP54-212ENST00000513248 MEFVO15553 781 aaPredicted RBP5.52□□□□□ -1.53
NUP54-212ENST00000513248 LCP1P13796 627 aa5.52□□□□□ -1.53
NUP54-212ENST00000513248 LTBRP36941 435 aa5.52□□□□□ -1.53
NUP54-212ENST00000513248 SUMO1P63165 101 aaKnown RBP5.52□□□□□ -1.53
NUP54-212ENST00000513248 NLRP10Q86W26 655 aa5.52□□□□□ -1.53
NUP54-212ENST00000513248 PPIL6Q8IXY8 311 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms