RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TRIM9Q9C026 710 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 CCSER1Q9C0I3 900 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 HDAC9Q9UKV0 1011 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 PCDHA6Q9UN73 950 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 TFR2Q9UP52 801 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 PCDHA8Q9Y5H6 950 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 SIGLEC1Q9BZZ2 1709 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 DDX39AO00148 427 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 NT5C2P49902 561 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 CLNS1AP54105 237 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 TBX2Q13207 712 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 TRIM7Q9C029 511 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 FAM114A2Q9NRY5 505 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 CEP72Q9P209 647 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 XDHP47989 1333 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 CCDC169A6NNP5 214 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 HMGB1P1B2RPK0 211 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 RHOBTB3O94955 611 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 FERP16591 822 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 ATP2B4P23634 1241 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 DHX9Q08211 1270 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 MSANTD4Q8NCY6 345 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 HPS3Q969F9 1004 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 HPCAL4Q9UM19 191 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 L1RE1Q9UN81 338 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 ATP8A1Q9Y2Q0 1164 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 H3BQF6 201 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 SASH3O75995 380 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 FAM83BQ5T0W9 1011 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 GPATCH4Q5T3I0 446 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 ALKBH5Q6P6C2 394 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 KCTD1Q719H9 257 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 RNF10Q8N5U6 811 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 FEZ2Q9UHY8 353 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 PLAAQ9Y263 795 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 HOXA7P31268 230 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 SARSP49591 514 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 C10orf76Q5T2E6 689 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 ICE2Q659A1 982 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 ZNF34Q8IZ26 560 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 ANKRD42Q8N9B4 389 aa9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 NOVA2Q9UNW9 492 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-216ENST00000512820 MEIS1O00470 390 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 TTLL1O95922 423 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 ZBTB16Q05516 673 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 CDKAL1Q5VV42 579 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 MMS22LQ6ZRQ5 1243 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 GUF1Q8N442 669 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 MYCBPQ99417 103 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 CLIC2O15247 247 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 GAS7O60861 476 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 LMNB1P20700 586 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 ATP11AP98196 1134 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 STK4Q13043 487 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 RBM26Q5T8P6 1007 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 CLEC4GQ6UXB4 293 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 FAM178BQ8IXR5 827 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 RAD54LQ92698 747 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 HOMER3Q9NSC5 361 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 TMEM260Q9NX78 707 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 DAAM1Q9Y4D1 1078 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 KNDC1Q76NI1 1749 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 GFPT2O94808 682 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 ZRANB2O95218 330 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 ALDH3A1P30838 453 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 TROAPQ12815 778 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 NT5DC1Q5TFE4 455 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 SLFN13Q68D06 897 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 PROM2Q8N271 834 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 GIMAP8Q8ND71 665 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 NSUN4Q96CB9 384 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 ANKZF1Q9H8Y5 726 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 FAM217BQ9NTX9 383 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 RABGAP1Q9Y3P9 1069 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 CNTNAP5Q8WYK1 1306 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 USP17L5A8MUK1 530 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 SCNN1DP51172 638 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 PLTPP55058 493 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 CUL1Q13616 776 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 KIFC2Q96AC6 838 aa9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 MRRFQ96E11 262 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 IQCGQ9H095 443 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-216ENST00000512820 MEGF6O75095 1541 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 KLK7P49862 253 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 SMTNP53814 917 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 MCTP2Q6DN12 878 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 FBXO11Q86XK2 927 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 IMPG2Q9BZV3 1241 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 TMEM60Q9H2L4 133 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 GCNT4Q9P109 453 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 BIRC3Q13489 604 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 SNCBQ16143 134 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 PDXDC1Q6P996 788 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 VSIG1Q86XK7 387 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 FAM186BQ8IYM0 893 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 CCDC197Q8NCU1 140 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 MAGOHBQ96A72 148 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 VEZTQ9HBM0 779 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 MYO5BQ9ULV0 1848 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms