RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 JRKLQ9Y4A0 524 aa19.88■□□□□ 0.77
CCHCR1-228ENST00000509552 EPHB6O15197 1021 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 EIF4A3P38919 411 aaKnown RBP19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 DOK7Q18PE1 504 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 HSP90B2PQ58FF3 399 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 HYIQ5T013 277 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 CCDC65Q8IXS2 484 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 MXD3Q9BW11 206 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 TMX4Q9H1E5 349 aaPredicted RBP19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 COL4A3BPQ9Y5P4 624 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 QSER1Q2KHR3 1735 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 LRRC53A6NM62 1247 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 TRAF5O00463 557 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 LCA5LO95447 670 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 CCDC40Q4G0X9 1142 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 EXOC4Q96A65 974 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 EHD4Q9H223 541 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 SH2D4AQ9H788 454 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 ADAM21Q9UKJ8 722 aa19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 ATF5Q9Y2D1 282 aaPredicted RBP19.87■□□□□ 0.77
CCHCR1-228ENST00000509552 RAD21O60216 631 aa19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 ARHGAP27Q6ZUM4 889 aa19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 GLIS3Q8NEA6 775 aa19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 ALS2CR12Q96Q35 445 aa19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 RNF216Q9NWF9 866 aaPredicted RBP19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 SLC26A4O43511 780 aa19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 CCDC70Q6NSX1 233 aa19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 APOBEC3HQ6NTF7 200 aaKnown RBP19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 GJA10Q969M2 543 aa19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 KIAA1024Q9UPX6 916 aa19.86■□□□□ 0.77
CCHCR1-228ENST00000509552 GNA14O95837 355 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 USP11P51784 963 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 ZCWPW2Q504Y3 356 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 CEP63Q96MT8 703 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 NUCKS1Q9H1E3 243 aaKnown RBP19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 PSD3Q9NYI0 1048 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 VPS18Q9P253 973 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 PCDHA1Q9Y5I3 950 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 PLA2G4BP0C869 781 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 NPR1P16066 1061 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 SLC1A4P43007 532 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 QRICH1Q2TAL8 776 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 PDXDC1Q6P996 788 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 DCAF4Q8WV16 495 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 BAP1Q92560 729 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 CCDC102AQ96A19 550 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 SNX12Q9UMY4 172 aa19.85■□□□□ 0.77
CCHCR1-228ENST00000509552 AFF2P51816 1311 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L15C9J2P7 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L13C9JLJ4 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L11C9JVI0 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L18D6R9N7 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L22D6RA61 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L17D6RBQ6 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L19D6RCP7 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L20D6RJB6 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 E9PMD0 336 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 ZNF185O15231 689 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 ERCC3P19447 782 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 ALDH1B1P30837 517 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 MAGEA1P43355 309 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L24Q0WX57 530 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 USP17L6PQ6QN14 398 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 VIPAS39Q9H9C1 493 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 MYH7BA7E2Y1 1941 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 MYH4Q9Y623 1939 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 PRLRP16471 622 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 CRKP46108 304 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 GYS2P54840 703 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 NFIAQ12857 509 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 SLFN12Q8IYM2 578 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 SMCR8Q8TEV9 937 aaPredicted RBP19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 ANO3Q9BYT9 981 aa19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 DHX36Q9H2U1 1008 aaKnown RBP19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 TRPC5Q9UL62 973 aaPredicted RBP19.84■□□□□ 0.77
CCHCR1-228ENST00000509552 SSU72P8A0A1W2PR75 194 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 HERC4Q5GLZ8 1057 aaPredicted RBP19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 GPBP1Q86WP2 473 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 FAM71BQ8TC56 605 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 MLXIPQ9HAP2 919 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 KCNMB3Q9NPA1 279 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 MED4Q9NPJ6 270 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 TBC1D7Q9P0N9 293 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 CEP72Q9P209 647 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 CAPN6Q9Y6Q1 641 aa19.83■□□□□ 0.76
CCHCR1-228ENST00000509552 LRRIQ3A6PVS8 624 aaPredicted RBP19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 MOCS3O95396 460 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 KRT18P05783 430 aaKnown RBP19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 HMGB2P26583 209 aaKnown RBP19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 TNNT3P45378 269 aaPredicted RBP19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 MAPK8IP2Q13387 824 aaPredicted RBP19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 SLFN13Q68D06 897 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 MKL1Q969V6 931 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 TRIM34Q9BYJ4 488 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 KANSL2Q9H9L4 492 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 NYAP2Q9P242 653 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 CYP3A7-CYP3A51PA0A087WV96 503 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 POTEB3A0JP26 581 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 POTECB2RU33 542 aa19.82■□□□□ 0.76
CCHCR1-228ENST00000509552 EEF2P13639 858 aaKnown RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms