RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 FIBPO43427 364 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 RGS20O76081 388 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 MYL3P08590 195 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 SREBF1P36956 1147 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 GJA9P57773 515 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 IRX5P78411 483 aaPredicted RBP13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 MTMR1Q13613 665 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 NONOQ15233 471 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 KCNA10Q16322 511 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 KRT25Q7Z3Z0 450 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 DHX37Q8IY37 1157 aaKnown RBP13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 PCSK9Q8NBP7 692 aaKnown RBP13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 UPF3AQ9H1J1 476 aaKnown RBP13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 MLXIPQ9HAP2 919 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 DDX41Q9UJV9 622 aaKnown RBP13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 Q9Y3F1 56 aa13.02□□□□□ -0.33
LIMCH1-210ENST00000509454 ADAMTS4O75173 837 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 GGPS1O95749 300 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 UBA1P22314 1058 aaKnown RBP13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 GJB2P29033 226 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 CPT1AP50416 773 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 ATN1P54259 1190 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 CHMP4BP1P59074 171 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 SP4Q02446 784 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 CCDC62Q6P9F0 684 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 PIK3AP1Q6ZUJ8 805 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 OXER1Q8TDS5 423 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 GPRASP2Q96D09 838 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 CDHR1Q96JP9 859 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 INPP4AQ96PE3 977 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 UIMC1Q96RL1 719 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 MXRA8Q9BRK3 442 aa13.01□□□□□ -0.33
LIMCH1-210ENST00000509454 SPATA31C2B4DYI2 1134 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 K7ELQ4 463 aaPredicted RBP13□□□□□ -0.33
LIMCH1-210ENST00000509454 MMP1P03956 469 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 HSP90AA1P07900 732 aaKnown RBP13□□□□□ -0.33
LIMCH1-210ENST00000509454 TGFB3P10600 412 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 ITGB5P18084 799 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 ACLYP53396 1101 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 LAMC2Q13753 1193 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 NEDD9Q14511 834 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 INF2Q27J81 1249 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 CEP55Q53EZ4 464 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 PLA2G4DQ86XP0 818 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 DIS3L2Q8IYB7 885 aaKnown RBP13□□□□□ -0.33
LIMCH1-210ENST00000509454 TBCKQ8TEA7 893 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 AFG1LQ8WV93 481 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 DPF3Q92784 378 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 SPATA33Q96N06 139 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 HTATIP2Q9BUP3 242 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 JADE2Q9NQC1 790 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 UBIAD1Q9Y5Z9 338 aa13□□□□□ -0.33
LIMCH1-210ENST00000509454 H3BQV1 296 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 NOP56O00567 594 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 ASGR1P07306 291 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 ICAM3P32942 547 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 MNX1P50219 401 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 MLLT1Q03111 559 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 ARHGAP1Q07960 439 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 NR5A1Q13285 461 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 NPY5RQ15761 445 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 PRR16Q569H4 304 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 CELF3Q5SZQ8 465 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 CYFIP1Q7L576 1253 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 KLHDC9Q8NEP7 349 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 CYP2W1Q8TAV3 490 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 TSEN34Q9BSV6 310 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 STARD7Q9NQZ5 370 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 PHF24Q9UPV7 400 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 MYH7BA7E2Y1 1941 aa12.99□□□□□ -0.33
LIMCH1-210ENST00000509454 A0A1W2PQ45 241 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 A0A1W2PQY0 241 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 MOXD2PA6NHM9 499 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 BTBD18B2RXH4 712 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 CYP3A4P08684 503 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 CST5P28325 142 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 SP2Q02086 613 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 SEMA3FQ13275 785 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 LETM2Q2VYF4 491 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 MCTP1Q6DN14 999 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 CXCL17Q6UXB2 119 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 GIMAP8Q8ND71 665 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 GLT1D1Q96MS3 346 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 SDF4Q9BRK5 362 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 KCNH7Q9NS40 1196 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 POLR3EQ9NVU0 708 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 TCEAL9Q9UHQ7 104 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 FAM86B1E9PN63 330 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 M0R2N6 131 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 DDX39AO00148 427 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 CTAGE5O15320 804 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 FAM86B2P0C5J1 330 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 ARP10275 920 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 ATP2B1P20020 1258 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 USP11P51784 963 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 SETQ01105 290 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 MYSM1Q5VVJ2 828 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 NEK8Q86SG6 692 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 FBXO18Q8NFZ0 1043 aa12.98□□□□□ -0.33
LIMCH1-210ENST00000509454 SNX21Q969T3 373 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms