RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 HDAC8Q9BY41 377 aa6.09□□□□□ -1.43
NUP54-206ENST00000508465 KRTAP17-1Q9BYP8 105 aa6.09□□□□□ -1.43
NUP54-206ENST00000508465 EPB41L4AQ9HCS5 686 aaPredicted RBP6.09□□□□□ -1.43
NUP54-206ENST00000508465 TNFRSF10DQ9UBN6 386 aa6.09□□□□□ -1.43
NUP54-206ENST00000508465 BCL9O00512 1426 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 RGPD1P0DJD0 1748 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 NSD2O96028 1365 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 KIF24Q5T7B8 1368 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 U2SURPO15042 1029 aaKnown RBP6.08□□□□□ -1.44
NUP54-206ENST00000508465 HTR3BO95264 441 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 PHKG2P15735 406 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 SDHBP21912 280 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 CDR1P51861 262 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 ERVFRD-1P60508 538 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 LAPTM5Q13571 262 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 SLC15A2Q16348 729 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 ZNF827Q17R98 1081 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 PLEKHO1Q53GL0 409 aaPredicted RBP6.08□□□□□ -1.44
NUP54-206ENST00000508465 ZNF530Q6P9A1 599 aaPredicted RBP6.08□□□□□ -1.44
NUP54-206ENST00000508465 FAM129CQ86XR2 697 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 LINC01356Q8N9X3 169 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 HHIPL1Q96JK4 782 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 STK32BQ9NY57 414 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 ASAP1Q9ULH1 1129 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 SBF2Q86WG5 1849 aa6.08□□□□□ -1.44
NUP54-206ENST00000508465 PARD3Q8TEW0 1356 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 IGSF1Q8N6C5 1336 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 PCDH11XQ9BZA7 1347 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 PCDH11YQ9BZA8 1340 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 WTIPA6NIX2 430 aaPredicted RBP6.07□□□□□ -1.44
NUP54-206ENST00000508465 RGS13O14921 159 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 DIAPH1O60610 1272 aaKnown RBP6.07□□□□□ -1.44
NUP54-206ENST00000508465 EFEMP2O95967 443 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 F13A1P00488 732 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 PF4P02776 101 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 SYPP08247 313 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 NFKB2Q00653 900 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 PLP2Q04941 152 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 SPATS1Q496A3 300 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 EAPPQ56P03 285 aaPredicted RBP6.07□□□□□ -1.44
NUP54-206ENST00000508465 FRMD5Q7Z6J6 570 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 LDHDQ86WU2 507 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 RELL1Q8IUW5 271 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 TMEFF1Q8IYR6 380 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 IFNL2Q8IZJ0 200 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 PWWP2AQ96N64 755 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.07□□□□□ -1.44
NUP54-206ENST00000508465 CCNL1Q9UK58 526 aaPredicted RBP6.07□□□□□ -1.44
NUP54-206ENST00000508465 TAF6LQ9Y6J9 622 aa6.07□□□□□ -1.44
NUP54-206ENST00000508465 FAM208AQ9UK61 1670 aaKnown RBP6.07□□□□□ -1.44
NUP54-206ENST00000508465 TMEM82A0PJX8 343 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 GRIN3BO60391 1043 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 FKTNO75072 461 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 ENDOUP21128 410 aaKnown RBP6.06□□□□□ -1.44
NUP54-206ENST00000508465 PPP2R1AP30153 589 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 KCNA1Q09470 495 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 RAB3GAP1Q15042 981 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 ZXDCQ2QGD7 858 aaPredicted RBP6.06□□□□□ -1.44
NUP54-206ENST00000508465 NLGN1Q8N2Q7 840 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 TMOD3Q9NYL9 352 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 TFCP2L1Q9NZI6 479 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 KLHL14Q9P2G3 628 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 WNK3Q9BYP7 1800 aa6.06□□□□□ -1.44
NUP54-206ENST00000508465 RAG1P15918 1043 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 PSMD2Q13200 908 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 PWP1Q13610 501 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 MTHFSDQ2M296 383 aaKnown RBP6.05□□□□□ -1.44
NUP54-206ENST00000508465 NBPF9Q3BBW0 867 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 C1orf141Q5JVX7 400 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 TMC6Q7Z403 805 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 SYT8Q8NBV8 401 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 PHACTR3Q96KR7 559 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 FCRL2Q96LA5 508 aaPredicted RBP6.05□□□□□ -1.44
NUP54-206ENST00000508465 PLCD4Q9BRC7 762 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 TMPRSS5Q9H3S3 457 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 SPON1Q9HCB6 807 aa6.05□□□□□ -1.44
NUP54-206ENST00000508465 PPP1R1BQ9UD71 204 aaPredicted RBP6.05□□□□□ -1.44
NUP54-206ENST00000508465 POLR3KQ9Y2Y1 108 aaPredicted RBP6.05□□□□□ -1.44
NUP54-206ENST00000508465 ERVV-2B6SEH9 535 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 BUB1BO60566 1050 aaPredicted RBP6.04□□□□□ -1.44
NUP54-206ENST00000508465 U2AF1L5P0DN76 240 aaPredicted RBP6.04□□□□□ -1.44
NUP54-206ENST00000508465 GBP2P32456 591 aaPredicted RBP6.04□□□□□ -1.44
NUP54-206ENST00000508465 CYP4F8P98187 520 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 U2AF1Q01081 240 aaKnown RBP eCLIP6.04□□□□□ -1.44
NUP54-206ENST00000508465 RAD51AP2Q09MP3 1159 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 ITPK1Q13572 414 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 MPP2Q14168 576 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 AMOTQ4VCS5 1084 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 TMC3Q7Z5M5 1100 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 COL23A1Q86Y22 540 aaPredicted RBP6.04□□□□□ -1.44
NUP54-206ENST00000508465 IGDCC3Q8IVU1 814 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 SMARCC1Q92922 1105 aaPredicted RBP6.04□□□□□ -1.44
NUP54-206ENST00000508465 CFAP53Q96M91 514 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 ADAM7Q9H2U9 754 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 RNF19AQ9NV58 838 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 NCAPD2Q15021 1401 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 NPC1L1Q9UHC9 1359 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 BTAF1O14981 1849 aa6.04□□□□□ -1.44
NUP54-206ENST00000508465 NUP188Q5SRE5 1749 aa6.03□□□□□ -1.44
NUP54-206ENST00000508465 ANKRD26Q9UPS8 1709 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms