RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 H3BQV1 296 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 FOSP01100 380 aaPredicted RBP11.46□□□□□ -0.57
NUP54-203ENST00000504173 EIF2AK2P19525 551 aaKnown RBP11.46□□□□□ -0.57
NUP54-203ENST00000504173 KRT2P35908 639 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 CACNB2Q08289 660 aaPredicted RBP11.46□□□□□ -0.57
NUP54-203ENST00000504173 AP3B2Q13367 1082 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 SAFBQ15424 915 aaKnown RBP eCLIP11.46□□□□□ -0.57
NUP54-203ENST00000504173 MFSD14CQ5VZR4 134 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 MCTP2Q6DN12 878 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 SPRYD3Q8NCJ5 442 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 RASGRP4Q8TDF6 673 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 PGBD1Q96JS3 809 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 TINF2Q9BSI4 451 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 ANO3Q9BYT9 981 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 RNF39Q9H2S5 420 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 EHMT1Q9H9B1 1298 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 PXMP2Q9NR77 195 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 TMEM260Q9NX78 707 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 FLRT1Q9NZU1 646 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 PCDHA6Q9UN73 950 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 PCDHA8Q9Y5H6 950 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 ZDBF2Q9HCK1 2354 aa11.46□□□□□ -0.58
NUP54-203ENST00000504173 CHD7Q9P2D1 2997 aa11.46□□□□□ -0.58
NUP54-203ENST00000504173 ASTN1O14525 1302 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 LOC102724159A0A0B4J2E5 919 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 PRR33A8MZF0 331 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 ADAMTS3O15072 1205 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 MMP1P03956 469 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 CLK2P49760 499 aaKnown RBP11.45□□□□□ -0.58
NUP54-203ENST00000504173 PDE4DQ08499 809 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 ADGRE1Q14246 886 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 SNX17Q15036 470 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 PWP2Q15269 919 aaKnown RBP11.45□□□□□ -0.58
NUP54-203ENST00000504173 NPY5RQ15761 445 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 LARP1BQ659C4 914 aaKnown RBP11.45□□□□□ -0.58
NUP54-203ENST00000504173 MAMDC4Q6UXC1 1216 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 ARMCX2Q7L311 632 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 MSL3Q8N5Y2 521 aaKnown RBP11.45□□□□□ -0.58
NUP54-203ENST00000504173 FBXO18Q8NFZ0 1043 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 PRDM12Q9H4Q4 367 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 PDLIM7Q9NR12 457 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 TSHZ2Q9NRE2 1034 aa11.45□□□□□ -0.58
NUP54-203ENST00000504173 TCF20Q9UGU0 1960 aaKnown RBP11.45□□□□□ -0.58
NUP54-203ENST00000504173 FRMPD4Q14CM0 1322 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 FAM86C2PA6NEL3 165 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 PI4K2BG5E9Z4 385 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 DNM1LO00429 736 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 NR3C2P08235 984 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 PDCP20941 246 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 CCND3P30281 292 aaPredicted RBP11.44□□□□□ -0.58
NUP54-203ENST00000504173 CYP2C19P33261 490 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 ATN1P54259 1190 aaPredicted RBP11.44□□□□□ -0.58
NUP54-203ENST00000504173 GNL2Q13823 731 aaKnown RBP11.44□□□□□ -0.58
NUP54-203ENST00000504173 PGM5Q15124 567 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 CCDC85BQ15834 202 aaPredicted RBP11.44□□□□□ -0.58
NUP54-203ENST00000504173 KRT25Q7Z3Z0 450 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 DIS3L2Q8IYB7 885 aaKnown RBP11.44□□□□□ -0.58
NUP54-203ENST00000504173 OXER1Q8TDS5 423 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 IWS1Q96ST2 819 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 PDCD2LQ9BRP1 358 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.44□□□□□ -0.58
NUP54-203ENST00000504173 CNPY2Q9Y2B0 182 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 ATP11BQ9Y2G3 1177 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 DDX49Q9Y6V7 483 aaKnown RBP11.44□□□□□ -0.58
NUP54-203ENST00000504173 CFAP54Q96N23 3096 aa11.44□□□□□ -0.58
NUP54-203ENST00000504173 CCDC194A0A1B0GVG4 234 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 VPS37CA5D8V6 355 aaPredicted RBP11.43□□□□□ -0.58
NUP54-203ENST00000504173 TRIM43BA6NCK2 446 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 BTBD18B2RXH4 712 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 M0R2N6 131 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 MYCLP12524 364 aaPredicted RBP11.43□□□□□ -0.58
NUP54-203ENST00000504173 EDNRBP24530 442 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 CCND2P30279 289 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 SREBF1P36956 1147 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 KCNQ1P51787 676 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 NR5A1Q13285 461 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 STXBP2Q15833 593 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 EEPD1Q7L9B9 569 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 IL31RAQ8NI17 732 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 MORC4Q8TE76 937 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 KHSRPQ92945 711 aaKnown RBP eCLIP11.43□□□□□ -0.584e-7■■■■□ 23.6
NUP54-203ENST00000504173 TRIM43Q96BQ3 446 aaPredicted RBP11.43□□□□□ -0.58
NUP54-203ENST00000504173 DAXXQ9UER7 740 aaPredicted RBP11.43□□□□□ -0.58
NUP54-203ENST00000504173 ZHX1Q9UKY1 873 aaPredicted RBP11.43□□□□□ -0.58
NUP54-203ENST00000504173 RBM19Q9Y4C8 960 aaKnown RBP11.43□□□□□ -0.58
NUP54-203ENST00000504173 FRMPD3Q5JV73 1810 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 MCM3APO60318 1980 aa11.43□□□□□ -0.58
NUP54-203ENST00000504173 WDFY4Q6ZS81 3184 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 SNAI1O95863 264 aaPredicted RBP11.42□□□□□ -0.58
NUP54-203ENST00000504173 IGHA2P01877 340 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 EPHB4P54760 987 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 ARHGAP4P98171 946 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 TFF2Q03403 129 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 NONOQ15233 471 aaKnown RBP eCLIP11.42□□□□□ -0.58
NUP54-203ENST00000504173 PRAMEF19Q5SWL8 479 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 C1orf53Q5VUE5 145 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 PCNX4Q63HM2 1172 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 MCTP1Q6DN14 999 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 SLC39A5Q6ZMH5 540 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 PIK3AP1Q6ZUJ8 805 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms