RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 PDE11AQ9HCR9 933 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 KCNQ5Q9NR82 932 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 PCDHA12Q9UN75 941 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 E9PMD0 336 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 ZNF185O15231 689 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 RAD21O60216 631 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 MARCH6O60337 910 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 FGFR1OPO95684 399 aaKnown RBP10.94□□□□□ -0.66
CLIP1-204ENST00000501271 GCFC2P16383 781 aaKnown RBP10.94□□□□□ -0.66
CLIP1-204ENST00000501271 EIF4A3P38919 411 aaKnown RBP10.94□□□□□ -0.66
CLIP1-204ENST00000501271 CRKP46108 304 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 KIF11P52732 1056 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 KIF5AQ12840 1032 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 HYIQ5T013 277 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 WDR93Q6P2C0 686 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 MYOCDQ8IZQ8 938 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 PROM2Q8N271 834 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 BAP1Q92560 729 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 SECISBP2LQ93073 1101 aaKnown RBP10.94□□□□□ -0.66
CLIP1-204ENST00000501271 IFIH1Q9BYX4 1025 aaKnown RBP10.94□□□□□ -0.66
CLIP1-204ENST00000501271 LRRC27Q9C0I9 530 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 EHD4Q9H223 541 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 PANK4Q9NVE7 773 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 TRPC5Q9UL62 973 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-204ENST00000501271 CAPN6Q9Y6Q1 641 aa10.94□□□□□ -0.66
CLIP1-204ENST00000501271 ATAD5Q96QE3 1844 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 POTEB3A0JP26 581 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 ANO9A1A5B4 782 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 POTECB2RU33 542 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 PDE2AO00408 941 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 SSBP05455 408 aaKnown RBP eCLIP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 USP14P54578 494 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 CACNB1Q02641 598 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 TCP10Q12799 353 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 SPA17Q15506 151 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 FAM26FQ5R3K3 315 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 POTEBQ6S5H4 581 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 RRAGAQ7L523 313 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 CCDC84Q86UT8 332 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 TSG101Q99816 390 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 TSGA10Q9BZW7 698 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 SH2D4AQ9H788 454 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 DBNDD1Q9H9R9 158 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 MLXIPQ9HAP2 919 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 TBC1D7Q9P0N9 293 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 KIAA1024Q9UPX6 916 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 PCDHA13Q9Y5I0 950 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 KDM3AQ9Y4C1 1321 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 NPHP3-ACAD11A0A0J9YXS1 232 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 DDTLA6NHG4 134 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 N4BP1O75113 896 aaKnown RBP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 LCA5LO95447 670 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 EEF2P13639 858 aaKnown RBP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 NPR1P16066 1061 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 KCNMA1Q12791 1236 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 CASP8Q14790 479 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 CDC37Q16543 378 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 P2RX7Q99572 595 aaKnown RBP10.93□□□□□ -0.66
CLIP1-204ENST00000501271 ANO3Q9BYT9 981 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 KCNMB3Q9NPA1 279 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 PCDHA2Q9Y5H9 948 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 PCDHA1Q9Y5I3 950 aa10.93□□□□□ -0.66
CLIP1-204ENST00000501271 LRRIQ3A6PVS8 624 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-204ENST00000501271 STAT3P40763 770 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 SLC1A4P43007 532 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 CKAP4Q07065 602 aaKnown RBP10.92□□□□□ -0.66
CLIP1-204ENST00000501271 SEPT2Q15019 361 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 PDXDC1Q6P996 788 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 FOXR2Q6PJQ5 311 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 NEK11Q8NG66 645 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 CCDC17Q96LX7 622 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 TANGO6Q9C0B7 1094 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 NT5C3AQ9H0P0 336 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 GBP3Q9H0R5 595 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 DEF6Q9H4E7 631 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 JADE2Q9NQC1 790 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 COL4A3BPQ9Y5P4 624 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 G3V3G9 751 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 TRAF5O00463 557 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 MOCS3O95396 460 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 TUBBP07437 444 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 PLA2G4BP0C869 781 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 HOXA7P31268 230 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-204ENST00000501271 FKBP3Q00688 224 aaKnown RBP10.92□□□□□ -0.66
CLIP1-204ENST00000501271 RAD51AP2Q09MP3 1159 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 DCAF8Q5TAQ9 597 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 SLFN13Q68D06 897 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 KIAA0825Q8IV33 1275 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 NELFCDQ8IXH7 590 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 MSL3Q8N5Y2 521 aaKnown RBP10.92□□□□□ -0.66
CLIP1-204ENST00000501271 ZDHHC15Q96MV8 337 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 FAM198AQ9UFP1 575 aa10.92□□□□□ -0.66
CLIP1-204ENST00000501271 SMCHD1A6NHR9 2005 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 MEIS2O14770 477 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 AKR1B10O60218 316 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 USO1O60763 962 aaKnown RBP10.91□□□□□ -0.66
CLIP1-204ENST00000501271 MED24O75448 989 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 CYP11B2P19099 503 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 SNAP25P60880 206 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 C2orf54Q08AI8 447 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms