RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 PANK3Q9H999 370 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 BCL2L12Q9HB09 334 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 FBXO40Q9UH90 709 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 SYNPO2Q9UMS6 1093 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 KIF24Q5T7B8 1368 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 ZSCAN20P17040 1043 aaPredicted RBP5.68□□□□□ -1.5
USP54-216ENST00000498143 MATR3P43243 847 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP54-216ENST00000498143 ERVK-9P63128 1117 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 ERVK-24P63145 666 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 OTOP3Q7RTS5 596 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 NLRP10Q86W26 655 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 SPATA24Q86W54 205 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 ERC1Q8IUD2 1116 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 ZFPM1Q8IX07 1006 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 SMC5Q8IY18 1101 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 CCAR2Q8N163 923 aaKnown RBP5.68□□□□□ -1.5
USP54-216ENST00000498143 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP54-216ENST00000498143 TSG101Q99816 390 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 MYL10Q9BUA6 226 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 KRT82Q9NSB4 513 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 EPG5Q9HCE0 2579 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 ERBB4Q15303 1308 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 PTPN13Q12923 2485 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 YDJCA8MPS7 323 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 HIP1RO75146 1068 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 PBX2P40425 430 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 PDE1CQ14123 709 aaPredicted RBP5.68□□□□□ -1.5
USP54-216ENST00000498143 ZSCAN26Q16670 478 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 MAP9Q49MG5 647 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 BROXQ5VW32 411 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 HOMER1Q86YM7 354 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 UBALD2Q8IYN6 164 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 MSANTD4Q8NCY6 345 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 PLBD2Q8NHP8 589 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 RAD9AQ99638 391 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 LRRC27Q9C0I9 530 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 CHPF2Q9P2E5 772 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 AK5Q9Y6K8 562 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 LRRC37A3O60309 1634 aa5.68□□□□□ -1.5
USP54-216ENST00000498143 KDM1AO60341 852 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 CCDC159P0C7I6 412 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 CCDC38Q502W7 563 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 RNF43Q68DV7 783 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 LMNTD2Q8IXW0 634 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 RPAP2Q8IXW5 612 aaPredicted RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 SEZ6LQ9BYH1 1024 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 NSRP1Q9H0G5 558 aaKnown RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 PAPPAQ13219 1627 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 PARNO95453 639 aaKnown RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 SLC25A27O95847 323 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 CD53P19397 219 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 AKAP17AQ02040 695 aaKnown RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 NEDD9Q14511 834 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 KRT72Q14CN4 511 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 UVSSAQ2YD98 709 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 KIAA1211LQ6NV74 962 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 MYLK4Q86YV6 388 aaPredicted RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 CACTIN-AS1Q8N1I8 211 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 APOL6Q9BWW8 343 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 ZC4H2Q9NQZ6 224 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 ANGPTL3Q9Y5C1 460 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 PLCH1Q4KWH8 1693 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 GCC2Q8IWJ2 1684 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 MED19A0JLT2 244 aaPredicted RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 ASB14A6NK59 587 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 E2F6O75461 281 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 TROVE2P10155 538 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP54-216ENST00000498143 GUCY2CP25092 1073 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 RANBP1P43487 201 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 SIM2Q14190 667 aaPredicted RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 FAM47AQ5JRC9 791 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 ZBTB9Q96C00 473 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 DTNBP1Q96EV8 351 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 BICD1Q96G01 975 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 CFHR5Q9BXR6 569 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 LRRC4CQ9HCJ2 640 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 POLKQ9UBT6 870 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 FBXO2Q9UK22 296 aaPredicted RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 OGDHLQ9ULD0 1010 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 V9GYY5 206 aaPredicted RBP5.67□□□□□ -1.5
USP54-216ENST00000498143 SYNGAP1Q96PV0 1343 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 TRPM1Q7Z4N2 1603 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 SHISA7A6NL88 538 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 PFDN1O60925 122 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 SMPD1P17405 629 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 G3BP1Q13283 466 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP54-216ENST00000498143 TTC39AQ5SRH9 613 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 HHATQ5VTY9 493 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 XRRA1Q6P2D8 792 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 OTUD6AQ7L8S5 288 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 PMM1Q92871 262 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 TMEM169Q96HH4 297 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 SCLYQ96I15 445 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 VCX3BQ9H321 246 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 MROH8Q9H579 483 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 TMCC3Q9ULS5 477 aa5.67□□□□□ -1.5
USP54-216ENST00000498143 IFIT2P09913 472 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 BMP1P13497 986 aa5.66□□□□□ -1.5
USP54-216ENST00000498143 CASTP20810 708 aaKnown RBP5.66□□□□□ -1.5
USP54-216ENST00000498143 MTHFRP42898 656 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms