RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZFPM1Q8IX07 1006 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 DNERQ8NFT8 737 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 PPP1R14AQ96A00 147 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 TOE1Q96GM8 510 aaKnown RBP6.88□□□□□ -1.31
VPS50-219ENST00000495039 TMEM169Q96HH4 297 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 ZSWIM3Q96MP5 696 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 WRNIP1Q96S55 665 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 ZNF747Q9BV97 191 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 JADE2Q9NQC1 790 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 PPP2CBP62714 309 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 PPP2CAP67775 309 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 KCNAB2Q13303 367 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 ZNF585AQ6P3V2 769 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 NLRP10Q86W26 655 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 IGDCC4Q8TDY8 1250 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 CPLX3Q8WVH0 158 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 DIO2Q92813 273 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 MRGPRX3Q96LB0 322 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 DTLQ9NZJ0 730 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 FTSJ1Q9UET6 329 aa6.87□□□□□ -1.31
VPS50-219ENST00000495039 SCAMP3O14828 347 aaKnown RBP6.86□□□□□ -1.31
VPS50-219ENST00000495039 HGSO14964 777 aaPredicted RBP6.86□□□□□ -1.31
VPS50-219ENST00000495039 BCL6P41182 706 aa6.86□□□□□ -1.31
VPS50-219ENST00000495039 SELENOPP49908 381 aa6.86□□□□□ -1.31
VPS50-219ENST00000495039 NCAPHQ15003 741 aa6.86□□□□□ -1.31
VPS50-219ENST00000495039 PALM2Q8IXS6 379 aa6.86□□□□□ -1.31
VPS50-219ENST00000495039 KBTBD2Q8IY47 623 aa6.86□□□□□ -1.31
VPS50-219ENST00000495039 TMEM209Q96SK2 561 aa6.86□□□□□ -1.31
VPS50-219ENST00000495039 MENTQ9BUN1 341 aa6.86□□□□□ -1.31
VPS50-219ENST00000495039 TCAF1Q9Y4C2 921 aa6.86□□□□□ -1.31
VPS50-219ENST00000495039 NASPP49321 788 aaPredicted RBP6.85□□□□□ -1.31
VPS50-219ENST00000495039 MLLT6P55198 1093 aaPredicted RBP6.85□□□□□ -1.31
VPS50-219ENST00000495039 CYP4F3Q08477 520 aa6.85□□□□□ -1.31
VPS50-219ENST00000495039 SLFN13Q68D06 897 aa6.85□□□□□ -1.31
VPS50-219ENST00000495039 CCDC103Q8IW40 242 aa6.85□□□□□ -1.31
VPS50-219ENST00000495039 KLHL36Q8N4N3 616 aa6.85□□□□□ -1.31
VPS50-219ENST00000495039 SEMA4AQ9H3S1 761 aa6.85□□□□□ -1.31
VPS50-219ENST00000495039 SLITRK6Q9H5Y7 841 aa6.85□□□□□ -1.31
VPS50-219ENST00000495039 CROTQ9UKG9 612 aa6.85□□□□□ -1.31
VPS50-219ENST00000495039 PCDHB4Q9Y5E5 795 aa6.85□□□□□ -1.31
VPS50-219ENST00000495039 MEFVO15553 781 aaPredicted RBP6.84□□□□□ -1.31
VPS50-219ENST00000495039 STEAP3Q658P3 488 aa6.84□□□□□ -1.31
VPS50-219ENST00000495039 TEPPQ6URK8 271 aa6.84□□□□□ -1.31
VPS50-219ENST00000495039 ARRDC4Q8NCT1 418 aa6.84□□□□□ -1.31
VPS50-219ENST00000495039 BTN2A2Q8WVV5 523 aa6.84□□□□□ -1.31
VPS50-219ENST00000495039 ZCCHC14Q8WYQ9 949 aaKnown RBP6.84□□□□□ -1.31
VPS50-219ENST00000495039 BARX1Q9HBU1 254 aaPredicted RBP6.84□□□□□ -1.31
VPS50-219ENST00000495039 TCRBV5S2A0A599 114 aa6.83□□□□□ -1.32
VPS50-219ENST00000495039 PATE3B3GLJ2 98 aa6.83□□□□□ -1.32
VPS50-219ENST00000495039 H7BY64 318 aa6.83□□□□□ -1.32
VPS50-219ENST00000495039 MUSKO15146 869 aa6.83□□□□□ -1.32
VPS50-219ENST00000495039 AMHP03971 560 aa6.83□□□□□ -1.32
VPS50-219ENST00000495039 HOXC12P31275 282 aa6.83□□□□□ -1.32
VPS50-219ENST00000495039 GJA8P48165 433 aa6.83□□□□□ -1.32
VPS50-219ENST00000495039 EMC4Q5J8M3 183 aa6.83□□□□□ -1.32
VPS50-219ENST00000495039 ACBD5Q5T8D3 534 aaPredicted RBP6.83□□□□□ -1.32
VPS50-219ENST00000495039 TMEFF2Q9UIK5 374 aaPredicted RBP6.83□□□□□ -1.32
VPS50-219ENST00000495039 B4GALT4O60513 344 aa6.82□□□□□ -1.32
VPS50-219ENST00000495039 RECKO95980 971 aa6.82□□□□□ -1.32
VPS50-219ENST00000495039 SNRPB2P08579 225 aaKnown RBP6.82□□□□□ -1.32
VPS50-219ENST00000495039 NFATC3Q12968 1075 aa6.82□□□□□ -1.32
VPS50-219ENST00000495039 R3HDM1Q15032 1099 aaKnown RBP6.82□□□□□ -1.32
VPS50-219ENST00000495039 TRMT10BQ6PF06 316 aaKnown RBP6.82□□□□□ -1.32
VPS50-219ENST00000495039 METTL16Q86W50 562 aaKnown RBP6.82□□□□□ -1.32
VPS50-219ENST00000495039 FAM169BQ8N8A8 192 aa6.82□□□□□ -1.32
VPS50-219ENST00000495039 LGR4Q9BXB1 951 aa6.82□□□□□ -1.32
VPS50-219ENST00000495039 PCED1AQ9H1Q7 454 aa6.82□□□□□ -1.32
VPS50-219ENST00000495039 STRIP2Q9ULQ0 834 aa6.82□□□□□ -1.32
VPS50-219ENST00000495039 TADA3O75528 432 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 LRG1P02750 347 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 SCG5P05408 212 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 ECI1P42126 302 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 LSAMPQ13449 338 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 TESK1Q15569 626 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 RCBTB1Q8NDN9 531 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 SEC16BQ96JE7 1060 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 CHAMP1Q96JM3 812 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 KRTAP9-8Q9BYQ0 159 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 FBXL7Q9UJT9 491 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 ZDHHC9Q9Y397 364 aa6.81□□□□□ -1.32
VPS50-219ENST00000495039 ARNTLO00327 626 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 ZNF623O75123 536 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 DGKIO75912 1065 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 CPP00450 1065 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 LTBRP36941 435 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 SPDYAQ5MJ70 313 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 PPIL6Q8IXY8 311 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 PHOSPHO1Q8TCT1 267 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 CCDC140Q96MF4 163 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 WWC2-AS2Q96NR7 200 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 PTPN18Q99952 460 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 MEGF9Q9H1U4 602 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 EPB41L1Q9H4G0 881 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 MYOTQ9UBF9 498 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.8□□□□□ -1.32
VPS50-219ENST00000495039 TESMINQ9Y4I5 508 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 PCDHA2Q9Y5H9 948 aa6.8□□□□□ -1.32
VPS50-219ENST00000495039 TBX1O43435 398 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 MAFKO60675 156 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 VAMP1P23763 118 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms