RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DISP2A7MBM2 1401 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 A0A087X0B3 334 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 POTEFA5A3E0 1075 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ENC1O14682 589 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 USO1O60763 962 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 POTEIP0CG38 1075 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 HPDP32754 393 aaPredicted RBP11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 MRPS25P82663 173 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SPP2Q13103 211 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 DALRD3Q5D0E6 543 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 POTEGQ6S5H5 508 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 POTEEQ6S8J3 1075 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ACRBPQ8NEB7 543 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CYP2J2P51589 502 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CYP27A1Q02318 531 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 DGKZQ13574 1117 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 LLGL1Q15334 1064 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ASPRV1Q53RT3 343 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ARFGAP2Q8N6H7 521 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 EHBP1Q8NDI1 1231 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CTAGE1Q96RT6 745 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZNF446Q9NWS9 450 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PSD3Q9NYI0 1048 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 LMO7Q8WWI1 1683 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SALL1Q9NSC2 1324 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GTPBP6O43824 516 aaPredicted RBP11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SUPT20HQ8NEM7 779 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 LARP4BQ92615 738 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 AKT1S1Q96B36 256 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 MAP3K14Q99558 947 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 FUCA2Q9BTY2 467 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TAOK3Q9H2K8 898 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PIM2Q9P1W9 311 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 DNM3Q9UQ16 869 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CACNA1FO60840 1977 aa11.83□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GOLGA6L10A0A0M3HER8 536 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TBC1D8O95759 1140 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 NDUFB10O96000 172 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CCDC122Q5T0U0 273 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GPATCH4Q5T3I0 446 aaKnown RBP11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CIAPIN1Q6FI81 312 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 RRAGAQ7L523 313 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CDAN1Q8IWY9 1227 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TCHPQ9BT92 498 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 RAVER2Q9HCJ3 691 aaKnown RBP11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 WDR19Q8NEZ3 1342 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 STK36Q9NRP7 1315 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 H7C1D1 291 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 STAT2P52630 851 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 VAV2P52735 878 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SPATA1Q5VX52 437 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 C16orf86Q6ZW13 317 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZNF668Q96K58 619 aaPredicted RBP11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 BHMT2Q9H2M3 363 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 RGL1Q9NZL6 768 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TFR2Q9UP52 801 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 BCL9LQ86UU0 1499 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 LONP1P36776 959 aaKnown RBP11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 RASA3Q14644 834 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SNCBQ16143 134 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ANO3Q9BYT9 981 aa11.82□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PNMA6FA0A0J9YX94 578 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 STXBP3O00186 592 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZBTB5O15062 677 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SPAG1Q07617 926 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SYDE2Q5VT97 1194 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 IFT81Q8WYA0 676 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TBC1D5Q92609 795 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CCDC17Q96LX7 622 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SBK1Q52WX2 424 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 POTEAQ6S8J7 498 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CCDC65Q8IXS2 484 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PYM1Q9BRP8 204 aaKnown RBP11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 NAA15Q9BXJ9 866 aaKnown RBP11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 L2HGDHQ9H9P8 463 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PANK4Q9NVE7 773 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 E7EVH7 732 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 KRT86O43790 486 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SLC37A4O43826 429 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 STX10O60499 249 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 IFT88Q13099 833 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 WHAMMP3Q1A5X7 153 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CNNM4Q6P4Q7 775 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CNGA4Q8IV77 575 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TAF4BQ92750 862 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 JMJD4Q9H9V9 463 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GOPCQ9HD26 462 aa11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.81□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PPP1R12BO60237 982 aaPredicted RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ACTN3Q08043 901 aaPredicted RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 KRT31Q15323 416 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZRSR2Q15696 482 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZKSCAN8Q15776 578 aaPredicted RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ARMCX5Q6P1M9 558 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 HOOK2Q96ED9 719 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GSDMAQ96QA5 445 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TUBGCP2Q9BSJ2 902 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 LUC7LQ9NQ29 371 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms