RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ANAPC15P60006 121 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ERVK-9P63128 1117 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ERVK-24P63145 666 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ZNF543Q08ER8 600 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ZYXQ15942 572 aaKnown RBP7.87□□□□□ -1.15
VPS52-219ENST00000493379 NBPF20Q3BBV1 942 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ADCK5Q3MIX3 580 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 C8orf34Q49A92 452 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 RRP12Q5JTH9 1297 aaKnown RBP7.87□□□□□ -1.15
VPS52-219ENST00000493379 GPATCH4Q5T3I0 446 aaKnown RBP7.87□□□□□ -1.15
VPS52-219ENST00000493379 DHX32Q7L7V1 743 aaKnown RBP7.87□□□□□ -1.15
VPS52-219ENST00000493379 TRMT44Q8IYL2 757 aaKnown RBP7.87□□□□□ -1.15
VPS52-219ENST00000493379 ABRAQ8N0Z2 381 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 SPICE1Q8N0Z3 855 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ANKRD13CQ8N6S4 541 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 MTMR8Q96EF0 704 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 NEK1Q96PY6 1258 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ALDH8A1Q9H2A2 487 aaPredicted RBP7.87□□□□□ -1.15
VPS52-219ENST00000493379 SLC38A10Q9HBR0 1119 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 DNAAF2Q9NVR5 837 aaKnown RBP7.87□□□□□ -1.15
VPS52-219ENST00000493379 BTBD7Q9P203 1132 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ZNF214Q9UL59 606 aaPredicted RBP7.87□□□□□ -1.15
VPS52-219ENST00000493379 SNX14Q9Y5W7 946 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 RLFQ13129 1914 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 ACACBO00763 2458 aa7.87□□□□□ -1.15
VPS52-219ENST00000493379 CHD7Q9P2D1 2997 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 GFRA3O60609 400 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 FLOT1O75955 427 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 DKK1O94907 266 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 HOXC6P09630 235 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 XRCC5P13010 732 aaKnown RBP7.86□□□□□ -1.15
VPS52-219ENST00000493379 MAPK4P31152 587 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 RCAN1P53805 252 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 DPYDQ12882 1025 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 TRIM32Q13049 653 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 TMEM132BQ14DG7 1078 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 FAM83BQ5T0W9 1011 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 POTEGQ6S5H5 508 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 ERMP1Q7Z2K6 904 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 RIOX2Q8IUF8 465 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 MICALL1Q8N3F8 863 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 SMCR8Q8TEV9 937 aaPredicted RBP7.86□□□□□ -1.15
VPS52-219ENST00000493379 CLP1Q92989 425 aaKnown RBP7.86□□□□□ -1.15
VPS52-219ENST00000493379 SLF1Q9BQI6 1058 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 ZKSCAN3Q9BRR0 538 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 LY9Q9HBG7 655 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 TOMM22Q9NS69 142 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 FBXO28Q9NVF7 368 aa7.86□□□□□ -1.15
VPS52-219ENST00000493379 GPR179Q6PRD1 2367 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 LAMA4Q16363 1823 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 ZNF536O15090 1300 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 MAP1BP46821 2468 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 RIF1Q5UIP0 2472 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 TMEM232C9JQI7 657 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 SH2B2O14492 632 aaPredicted RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 IFIT3O14879 490 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 PRC1O43663 620 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 SLC25A27O95847 323 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 PSMA5P28066 241 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 COPB2P35606 906 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 STAT2P52630 851 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 FCGRTP55899 365 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 CCNA1P78396 465 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 ATP2B2Q01814 1243 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 SART3Q15020 963 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 PPP2R5BQ15173 497 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 ASPRV1Q53RT3 343 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 OXLD1Q5BKU9 147 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 IFIT1BQ5T764 474 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 RALYLQ86SE5 291 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 SIX5Q8N196 739 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 LRRC47Q8N1G4 583 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 ATG4CQ96DT6 458 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 NUP88Q99567 741 aaPredicted RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 UBAC1Q9BSL1 405 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 MOV10L1Q9BXT6 1211 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 SPATC1LQ9H0A9 340 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 RANBP17Q9H2T7 1088 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 MROH8Q9H579 483 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 RIOX1Q9H6W3 641 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 KAT14Q9H8E8 782 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 SENP2Q9HC62 589 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 MAD2L2Q9UI95 211 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 CDV3Q9UKY7 258 aaKnown RBP7.85□□□□□ -1.15
VPS52-219ENST00000493379 PNMA2Q9UL42 364 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 PRR12Q9ULL5 1215 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 KIAA1024Q9UPX6 916 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 PLXNA1Q9UIW2 1896 aa7.85□□□□□ -1.15
VPS52-219ENST00000493379 SLC15A5A6NIM6 579 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 RNF223E7ERA6 249 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 DDAH1O94760 285 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 COL6A1P12109 1028 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 STAT3P40763 770 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 KCNC4Q03721 635 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 GRB14Q14449 540 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 GRM4Q14833 912 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 WTAPQ15007 396 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 SWI5Q1ZZU3 235 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 TKFCQ3LXA3 575 aa7.84□□□□□ -1.15
VPS52-219ENST00000493379 TMEM67Q5HYA8 995 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms